Protein Alignment Rad23 and Ubqn

DIOPT Version :10

• Sequence 1: NP_651918.2
• Gene: Rad23 / 43785
• FlyBaseID: FBgn0026777
• Length: 414
• Species: Drosophila melanogaster
• Sequence 2: NP_608344.1
• Gene: Ubqn / 32977
• FlyBaseID: FBgn0031057
• Length: 547
• Species: Drosophila melanogaster
• Alignment Length: 546
• Identity: 109/546 - (19%)
• Similarity: 184/546 - (33%)
• Gaps: 176/546 - (32%)

  Fly    14 TIEFAPEKTVLELKKKIFE--ERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDEKKFIVVML--- 73
            |:|...:..:.:.|..:.:  |..||.:.    ||:||.|:.|..|:..:|:.:...:.:::
  Fly    21 TVEVDEDSGIKDFKILVAQKFEAEPEQLV----LIFAGKIMKDTDTLQMHNIKDNLTVHLVIKAP 81

  Fly    74 TRDSSSSNRNQLSVKES-------------------------------NKLTSTDDSKQS----- 102
            ||::....|....|:::                               |:|.:..|..:|
  Fly    82 TRNNEQPARQPADVRQTPFGLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNP 146

  Fly   103 MPCEEANH--------TNSPS-----STNTEDS------VLSRETRPLS-SDELIGELAQASLQS 147
            |..:..|:        |::|.     ..|.|.|      .|.|:|..|: :..::.||.::  ..
  Fly   147 MVQQMMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRS--HD 209

  Fly   148 RAESNLLMGDEYNQTVLSMVEMGYP---------REQVERAMAASY-----------------NN 186
            ||.||           |..|..||.         :|.:..|...|:                 ||
  Fly   210 RAMSN-----------LESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGAGNN 263

  Fly   187 PERAVEYLINGIPAEEGTFYNRLNESTNPSLIPSG---------PQPASATSAERS----TESNS 238
            |::..|.. |.:|...|    ..|..||.::..||         |.....|.|.||    ...|.
  Fly   264 PQQGTENR-NPLPNPWG----GANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMRSLLQQMADNP 323

  Fly   239 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQ--IGQTNPALLQLISENQDAFLNMLNQPIDRES 301
            ...:.|.:.|....|...:.|:|.:...:|..  :...||||.:.:.:....|:..:..|   |.
  Fly   324 AMMQNLLNAPYTRSMMESMSQDPDMAARLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNP---EV 385

  Fly   302 ESGATVPPVSNA--RIPSTLDNVDLFSPDLEVAT-----------SAQRSAAGTSAAHQSGSAAD 353
            .:..|.|...||  :|...::.:...:|.| |.|           :....|:|..:...||::.:
  Fly   386 MNMLTNPDAMNAILQIQQGMEQLRSAAPGL-VGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTN 449

  Fly   354 NEDLEQPLGVST--------------------IRL-----NRQD---------KDAIERLKALGF 384
            |......|...|                    :|:     |..|         :..:|:|.|:||
  Fly   450 NVSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEVRYQSQLEQLNAMGF 514

  Fly   385 PEA-LVLQAYFACEKNEEQAANFLLS 409
            ... ..|||..|...:...|...|||
  Fly   515 VNRDANLQALIATFGDINAAVERLLS 540

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad23	NP_651918.2	rad23	1..413	CDD:273167	109/546 (20%)
Ubqn	NP_608344.1	Ubl_PLICs	7..79	CDD:340506	14/61 (23%)
		PABP-1234	<233..409	CDD:130689	39/183 (21%)
		UBA_PLICs	501..537	CDD:270582	10/35 (29%)