DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Ubqln2

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001101721.1 Gene:Ubqln2 / 317396 RGDID:1563566 Length:638 Species:Rattus norvegicus


Alignment Length:472 Identity:99/472 - (20%)
Similarity:175/472 - (37%) Gaps:143/472 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ITIKNLQQQTFTIEFA-PE-KTVLELKKKI---FEERGPEYVAEKQKLIYAGVILTDDRTVGSYN 62
            :|:|..:::.   ||| || .||.:.|:.|   |:.:..:.|     ||:||.||.|..|:..:.
  Rat    35 VTVKTPKEKE---EFAVPENSTVQQFKEAISKRFKSQTDQLV-----LIFAGKILKDQDTLIQHG 91

  Fly    63 VDEKKFIVVMLTRDSSSSNR------NQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTED 121
            :.:...:.:::    .|.||      .|.|.......|:|..:..:.| ..|..:::|..:.|  
  Rat    92 IHDGLTVHLVI----KSQNRPQGQATTQPSTTAGTSTTTTTTTTAAAP-PAATTSSAPRCSTT-- 149

  Fly   122 SVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNN 186
                 .|...||:..:|.||..       .||.:... |.|.|        :.|:::.:.||   
  Rat   150 -----ATTTNSSNLGLGSLASL-------GNLGLNSS-NFTEL--------QNQMQQQLLAS--- 190

  Fly   187 PERAVEYLINGIPAEEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQPQFL 251
            ||..::.:       |..|...:  .:||.|:.                      :.:.:.|   
  Rat   191 PEMMIQIM-------ENPFVQSM--LSNPDLMR----------------------QLIMANP--- 221

  Fly   252 QMRSLIYQNPHLLHA-----VLQQIGQ--TNPALLQLISENQDAFLN------------------ 291
            ||:.||.:||.:.|.     :::|..:  .|||::|.:..|||..|:                  
  Rat   222 QMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTD 286

  Fly   292 ----MLNQPIDRESESG---ATVPPVSNA---RIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAH 346
                |||..  :|...|   |||...|::   ..||..:|.|..........:.|.||..|:...
  Rat   287 IQEPMLNAA--QEQFGGNPFATVGSSSSSGEGTQPSRTENRDPLPNPWAPPPTTQTSATTTTTTT 349

  Fly   347 QSGSAADNEDLEQPLGVSTIRLN------------------RQDKDAIERLKALGFPEALVLQAY 393
            .||:.|.:.......|.:....|                  .::...|:.:.:..:..:::.   
  Rat   350 SSGTVAGSNTSSTTAGNTMAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQ--- 411

  Fly   394 FACEKNEEQAANFLLSS 410
             :..:|.:.||..:|||
  Rat   412 -SLSQNPDMAAQMMLSS 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 99/472 (21%)
Ubqln2NP_001101721.1 Ubl_PLICs 31..103 CDD:340506 21/79 (27%)
STI1 194..227 CDD:128966 8/66 (12%)
STI1 220..265 CDD:450205 15/47 (32%)
STI1 393..440 CDD:128966 7/39 (18%)
UBA_PLICs 595..634 CDD:270582
Blue background indicates that the domain is not in the aligned region.

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