DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Ubqln4

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001101158.1 Gene:Ubqln4 / 310633 RGDID:1308273 Length:595 Species:Rattus norvegicus


Alignment Length:597 Identity:117/597 - (19%)
Similarity:191/597 - (31%) Gaps:208/597 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ITIKNLQQQTFTIEFAPEKTVLELKKKI---FEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVD 64
            :|:|..:.:. .|....:.:|.|.|::|   |:.:..:.|     ||:||.||.|..|:..:.:.
  Rat    15 VTVKTPKDKE-EILICDQASVKEFKEEISRRFKAQQDQLV-----LIFAGKILKDGDTLNQHGIK 73

  Fly    65 EKKFIVVML-----TRDSSSSNRNQLSVKESNKLTSTDDSKQS---MPCEEANHTNSPSS----- 116
            :...:.:::     .:|..::..:..|..:|....||..:..:   .||...|.|:..||     
  Rat    74 DGLTVHLVIKTPQKAQDPVTTTASSPSTPDSASAPSTTPASPAAPVQPCSSGNTTSDASSGGGPS 138

  Fly   117 -------TNTEDSVLSRETRPLSSDEL-IGELAQASLQSRAESNLLMGDEY------NQTVLSMV 167
                   :|...|:||.....|....| :|......||.:.:..|:...|.      |..|..|:
  Rat   139 PVAAEGPSNATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMM 203

  Fly   168 E---------MGYPREQ--VERAMAASY--NNPE-----------------------RAVEYLIN 196
            .         |..|:.|  :||....|:  ||||                       ||:..| .
  Rat   204 SNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNL-E 267

  Fly   197 GIPAEEGTFYNRL----------------------------------------NESTNPSLIPSG 221
            .:|..    ||.|                                        .|:..|...|..
  Rat   268 SVPGG----YNALRRMYTDIQEPMFTAAREQFGNNPFSSLAGNSDNSSSQPLRTENREPLPNPWS 328

  Fly   222 PQP--------------ASATSAERSTESNSDPFEF--------LRSQPQFLQMRSLIYQNPHLL 264
            |.|              .|.||....|.||  ||..        :.:.|:...:...|.:||.|:
  Rat   329 PSPPTSQAPGSGGEGTGGSGTSQVHPTVSN--PFGINAASLGSGMFNSPEMQALLQQISENPQLM 391

  Fly   265 HAV---------LQQIGQT----------------NPALLQLISENQDAFLNMLNQP-------- 296
            ..|         :|.:.|.                ||.|.:.:......||..:..|        
  Rat   392 QNVISAPYMRTMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTN 456

  Fly   297 ---------IDR-----ESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAA-- 345
                     |.:     ::|:...||.:.:...|.|  :|.|...:...|..|..::.||.|.  
  Rat   457 PRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGTPRT--SVPLAGSNSGSAAEAPTASPGTPATTP 519

  Fly   346 HQSGSAADNEDLEQ-----------PLGVSTIRLNRQDKDAIERLKALGFPEALV-LQAYFACEK 398
            ..:||....:.::|           .:.|..:|..:|    :|:|.::||..... |||..|...
  Rat   520 PSAGSNTQQQLMQQMIQLLSGSGNSQVPVPEVRFQQQ----LEQLNSMGFVNREANLQALIATGG 580

  Fly   399 NEEQAANFLLSS 410
            :...|...||.|
  Rat   581 DINAAIERLLGS 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 117/597 (20%)
RAD23_N 1..76 CDD:176400 17/80 (21%)
UBA1_Rhp23p_like 153..199 CDD:270561 18/87 (21%)
XPC-binding 242..296 CDD:286376 13/86 (15%)
UBA2_HR23A 371..411 CDD:270610 13/41 (32%)
Ubqln4NP_001101158.1 UBQ 13..83 CDD:214563 17/73 (23%)
hPLIC_N 13..83 CDD:176403 17/73 (23%)
STI1 186..223 CDD:128966 7/36 (19%)
UBA_PLICs 552..591 CDD:270582 12/42 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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