Protein Alignment Rad23 and Ubqln3

DIOPT Version :9

• Sequence 1: NP_001259052.1
• Gene: Rad23 / 43785
• FlyBaseID: FBgn0026777
• Length: 414
• Species: Drosophila melanogaster
• Sequence 2: XP_017444687.1
• Gene: Ubqln3 / 308905
• RGDID: 1304920
• Length: 678
• Species: Rattus norvegicus
• Alignment Length: 495
• Identity: 96/495 - (19%)
• Similarity: 160/495 - (32%)
• Gaps: 161/495 - (32%)

  Fly     3 ITIKN-LQQQTFTIEFAPEKTVLELKKKI---FEERGPEYVAEKQKLIYAGVILTDDRTVGSYNV 63
            :|:|. ..::.|::  ....|:.:||:||   |:....:.|     ||:||.||.|..::....|
  Rat    47 VTVKTPKDKEDFSV--VDTCTIRQLKEKISHRFKAHPNQLV-----LIFAGKILKDPDSLAQCGV 104

  Fly    64 DE--KKFIVVMLTRDS----------SSSNRNQLSVKESNKLTSTDDSK----------QSMPCE 106
            .:  ...:|:.:.|.:          |:...|.|.:.:.|.....|.|.          ..:...
  Rat   105 RDGLTVHLVIKMQRRTTGTECPAPPVSTPGPNPLELPQPNSAYPVDGSPSFSLGVLTGLSGLGLT 169

  Fly   107 EANHTNSPSSTNTEDSVLSRETRPLSSDELI-GELAQASLQSRAESNLLMGDEYNQTVLSM-VEM 169
            ..:.::.|.|...:...:......|..|..| |.|:...|..:    |::.:.:.|.::.. .|:
  Rat   170 SGSFSDQPGSLMWQHMSVPELVAQLVDDPFIQGLLSNTGLMRQ----LVLDNPHMQQLIQQNPEI 230

  Fly   170 GYPREQVERAMAASYNNPE---RAVEYLIN-------------------GIPAEEGTFYNRLNES 212
            |:           ..||||   :.:|:|.|                   .||..    ||.|...
  Rat   231 GH-----------ILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGG----YNVLRTM 280

  Fly   213 TNPSLIPS--------GPQP-ASATSAERSTES-------NSDPFEFLRSQPQFLQMRSLIYQNP 261
            ....:.|.        |..| |:||:|..:|.|       |.||.                 .||
  Rat   281 YTDIMDPMLNAVQEQFGGNPFATATTASTTTTSSQPSRTENCDPL-----------------PNP 328

  Fly   262 -------------------------HLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRES 301
                                     :.|.:.|..||..:  .||.:.|...|..:.|...:...|
  Rat   329 WTSTCGVSGSRQGRQPGDQDTSESRNRLPSFLGNIGLFD--YLQQLHETSQALGSYLQGTVPTPS 391

  Fly   302 ESGATVPPVSNARIPSTL--------------DNVDL---FSPDLEVATSAQRSAAGTSAAHQSG 349
            .|..|  |:|..|:|..|              |:|.:   .|....:..|::.|.....:.|.||
  Rat   392 SSQET--PLSGNRVPPNLPPSPKPGSGQPLPKDSVAIKGKSSCPAFLRHSSENSTGQGGSLHDSG 454

  Fly   350 SAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALV 389
            .::.......|      .|..|..|...|...:..|.:|:
  Rat   455 KSSTGPSTGLP------NLTSQIGDNANRSPFVSTPSSLI 488

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad23	NP_001259052.1	rad23	1..413	CDD:273167	96/495 (19%)
		RAD23_N	1..76	CDD:176400	19/78 (24%)
		UBA1_Rhp23p_like	153..199	CDD:270561	11/68 (16%)
		XPC-binding	242..296	CDD:286376	11/78 (14%)
		UBA2_HR23A	371..411	CDD:270610	5/19 (26%)
Ubqln3	XP_017444687.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5272
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900