DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rad23 and Oasl

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001009681.1 Gene:Oasl / 304545 RGDID:1308586 Length:512 Species:Rattus norvegicus


Alignment Length:73 Identity:19/73 - (26%)
Similarity:38/73 - (52%) Gaps:4/73 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDEKK 67
            :.:||....:......|...||.||::|.:.:|.:  :::|:|.:.|.:|.|.....||.:.:. 
  Rat   433 VFVKNPDGGSHAYAIHPLDFVLSLKQQIEDRQGLQ--SQEQQLEFQGRVLEDWFDFKSYGIQDS- 494

  Fly    68 FIVVMLTR 75
             |.::|:|
  Rat   495 -ITIILSR 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 19/73 (26%)
RAD23_N 1..76 CDD:176400 19/73 (26%)
UBA1_Rhp23p_like 153..199 CDD:270561
XPC-binding 242..296 CDD:286376
UBA2_HR23A 371..411 CDD:270610
OaslNP_001009681.1 NT_2-5OAS_ClassI-CCAase 29..209 CDD:143390
OAS1_C 167..347 CDD:287404
UBQ 351..430 CDD:294102
UBQ 431..499 CDD:214563 17/69 (25%)
ubiquitin 436..502 CDD:278661 19/70 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.