DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Ubd

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_445751.2 Gene:Ubd / 29168 RGDID:69418 Length:161 Species:Rattus norvegicus


Alignment Length:112 Identity:25/112 - (22%)
Similarity:42/112 - (37%) Gaps:26/112 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 EKTVLELKKKIFEE-RGPEYVA-EKQKLIYAGVILTDDRTVGSYNVDEKKFI------------- 69
            :.|:.:..|||.|. |....|: :.|.|:....||...|.:.||.:|::..|             
  Rat    19 DTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEE 83

  Fly    70 -VVMLTRDSSSSNRNQLSVKESN----------KLTSTDDSKQSMPC 105
             .:.|........|:.|.|:.|:          .:|:....||.:.|
  Rat    84 LPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQFVNC 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 25/112 (22%)
RAD23_N 1..76 CDD:176400 17/71 (24%)
UBA1_Rhp23p_like 153..199 CDD:270561
XPC-binding 242..296 CDD:286376
UBA2_HR23A 371..411 CDD:270610
UbdNP_445751.2 UBQ 8..75 CDD:214563 16/55 (29%)
UBQ 17..75 CDD:294102 16/55 (29%)
UBQ 92..154 CDD:214563 8/39 (21%)
ubiquitin 95..154 CDD:278661 8/36 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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