DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and rhp23

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_596231.1 Gene:rhp23 / 2540481 PomBaseID:SPBC2D10.12 Length:368 Species:Schizosaccharomyces pombe


Alignment Length:437 Identity:151/437 - (34%)
Similarity:218/437 - (49%) Gaps:110/437 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTI-EFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVD 64
            |.:|.||||||.|.| :.:.:..:.|||:||..::  .|..|:|||||:|.||.||:|||.||:.
pombe     1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQ--NYEVERQKLIYSGRILADDKTVGEYNIK 63

  Fly    65 EKKFIVVMLTRDSSSSNRNQLSVKES-NKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSRET 128
            |:.|||.|::|..:|::..:.:...: |...|..:.|          ..:||||..|.:      
pombe    64 EQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKK----------VEAPSSTVAEST------ 112

  Fly   129 RPLSSDELIGELAQASLQSRAES-------NLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNN 186
               |:.:.:...|.::..:.|.|       .|.:|.:.|..|.:||||||.|.:|||||.|::||
pombe   113 ---STTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMGYERSEVERAMRAAFNN 174

  Fly   187 PERAVEYLINGIPAEEGTFYNRLNEST----------NPSLIP-SGPQPA-----SATSAERSTE 235
            |:||||||:.|||.:   ..||..|.:          :.:|.| |..|||     :|.|...:.|
pombe   175 PDRAVEYLLTGIPED---ILNRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQE 236

  Fly   236 SNS-----DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQ 295
            ..|     ||..||||.|||.|:|.::.|||.:|..:||||||.:|||.|.|::|.:|||.:|.:
pombe   237 QPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE 301

  Fly   296 PIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGSAADNEDLEQP 360
                                                      .|.|.||.              |
pombe   302 ------------------------------------------GAEGESAL--------------P 310

  Fly   361 LGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFL 407
            .|...|::.:::.::|:||..|||...:|:|||.||:||||.|||:|
pombe   311 SGGIQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYL 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 151/437 (35%)
RAD23_N 1..76 CDD:176400 37/75 (49%)
UBA1_Rhp23p_like 153..199 CDD:270561 27/45 (60%)
XPC-binding 242..296 CDD:286376 29/53 (55%)
UBA2_HR23A 371..411 CDD:270610 20/37 (54%)
rhp23NP_596231.1 rad23 1..363 CDD:273167 151/437 (35%)
RAD23_N 1..76 CDD:176400 38/76 (50%)
UBA1_Rhp23p_like 141..187 CDD:270561 27/45 (60%)
XPC-binding 247..302 CDD:286376 29/96 (30%)
UBA2_Rhp23p_like 321..360 CDD:270564 20/37 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 68 1.000 Domainoid score I2743
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37704
Inparanoid 1 1.050 203 1.000 Inparanoid score I988
OMA 1 1.010 - - QHG53856
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 1 1.000 - - oto101992
orthoMCL 1 0.900 - - OOG6_101279
Panther 1 1.100 - - LDO PTHR10621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1097
SonicParanoid 1 1.000 - - X1039
TreeFam 1 0.960 - -
1413.860

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