DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Ubqln3

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001371113.1 Gene:Ubqln3 / 244178 MGIID:3045291 Length:681 Species:Mus musculus


Alignment Length:125 Identity:27/125 - (21%)
Similarity:41/125 - (32%) Gaps:51/125 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 FQVHLAGFFIH-CFNRIILHASDLYRYTLLDYCDMPSSTTRCFAFR-----IQYVYGLWLVGATT 120
            :||.:...|.| |...||.|     |:.:        :.:.||..:     :||         .|
Mouse    39 WQVSIQQMFWHICGGSIISH-----RWVI--------TASHCFKKKRPGKEVQY---------RT 81

  Fly   121 VPLVI--ERYIATIKSSSYEHIGYRLGIYLALLQVTIAFICTFIAFHEFSFDEPTMSYCI 178
            |..||  |:|    ..|.|::            .|.:.::     .|.|.|.......||
Mouse    82 VQKVILHEKY----NQSEYDN------------DVALLYL-----HHPFYFTNYVQPVCI 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 27/125 (22%)
Ubqln3NP_001371113.1 Ubl_PLICs 43..115 CDD:340506 23/114 (20%)
STI1 212..256 CDD:128966
UBA_PLICs 641..678 CDD:270582
Blue background indicates that the domain is not in the aligned region.

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