DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Amfr

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_035917.2 Gene:Amfr / 23802 MGIID:1345634 Length:639 Species:Mus musculus


Alignment Length:153 Identity:36/153 - (23%)
Similarity:61/153 - (39%) Gaps:29/153 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 QMRSLIYQNPHLLHAVLQQIGQTNPALLQLISEN--------------QDAFLNMLNQPIDRES- 301
            |::.:..|.|:  |.|||.:..|..  :::.::|              .|:....||.|::|.| 
Mouse   459 QIQEMFPQVPY--HLVLQDLQMTRS--VEITTDNILEGRIQVPFPTQRSDSLRPALNSPVERPSP 519

  Fly   302 --ESGAT------VPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAA--HQSGSAADNED 356
              |.|..      ||...:.|:..|||..::....:||.....|.:..:.:|  .|.......:|
Mouse   520 DLEEGEASVQTERVPLDLSPRLEETLDFSEVELEPIEVEDFEARGSRFSKSADERQRMLVQRKDD 584

  Fly   357 LEQPLGVSTIRLNRQDKDAIERL 379
            |.|......:..:.:|..|.|||
Mouse   585 LLQQARKRFLNKSSEDDGASERL 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 36/153 (24%)
RAD23_N 1..76 CDD:176400
UBA1_Rhp23p_like 153..199 CDD:270561
XPC-binding 242..296 CDD:286376 12/57 (21%)
UBA2_HR23A 371..411 CDD:270610 5/9 (56%)
AmfrNP_035917.2 HRD1 82..>378 CDD:227568
zf-RING_2 335..375 CDD:290367
CUE_AMFR 454..494 CDD:270604 9/38 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 500..531 8/30 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..620 5/14 (36%)
VCP/p97-interacting motif (VIM). /evidence=ECO:0000250|UniProtKB:Q9UKV5 618..636
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815465 Normalized mean entropy S1702
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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