DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and F52C6.4

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001379809.1 Gene:F52C6.4 / 186086 WormBaseID:WBGene00018661 Length:100 Species:Caenorhabditis elegans


Alignment Length:101 Identity:23/101 - (22%)
Similarity:40/101 - (39%) Gaps:19/101 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYA---GVILTDDRTV-GSY 61
            |::::|....:|.|:| ||:....|             |.:||.:::.   |.:..|..|| .|.
 Worm     1 MLLSVKTSTGKTITVE-APKNVKTE-------------VRDKQGVVFTVSYGEVTGDPITVEASD 51

  Fly    62 NVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTD 97
            .:.:..|.|....|....... ::.||...|..:.|
 Worm    52 AIKDLNFKVAEAQRKPHREGM-RIYVKTCEKTITLD 86

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 23/101 (23%)
F52C6.4NP_001379809.1 Ubl1_cv_Nsp3_N-like 1..>31 CDD:475130 11/43 (26%)
Ubl1_cv_Nsp3_N-like 72..>100 CDD:475130 4/16 (25%)

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