DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and rad-23

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_496488.2 Gene:rad-23 / 174785 WormBaseID:WBGene00013924 Length:323 Species:Caenorhabditis elegans


Alignment Length:412 Identity:127/412 - (30%)
Similarity:189/412 - (45%) Gaps:101/412 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDEKK 67
            :|.:.|.|..|.:|...::|:.|:|..:..|:|.:|..|.|||||.|.||.|...||....|..|
 Worm     5 VTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVGFDSSK 69

  Fly    68 FIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST-NTEDSVLSRETRPL 131
            |:||||::               .|:|..                :|||| .|....:.....|.
 Worm    70 FVVVMLSK---------------RKVTEV----------------APSSTVATAAEPVPVAAAPA 103

  Fly   132 SSDELIGELA-QASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLI 195
            |:.....::| :|:..:.||:   :.||..:.||::..|||.|||...|:.|::.||:||||:|:
 Worm   104 SNPAPAADVAPEAAAPAEAEA---LTDEQEENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLL 165

  Fly   196 NGIPAEEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQPQFLQMRSLIYQN 260
            ||:|.:..        ...|.|   ||:    .:.:...|..:|....|.:.||..::|:||.||
 Worm   166 NGLPDDAA--------DQEPDL---GPE----QNIDNVDEDGNDDLNMLANMPQLAEIRALIQQN 215

  Fly   261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLF 325
            |.:|.|||||:...||.|:|.|..||.||:::||                               
 Worm   216 PEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLLN------------------------------- 249

  Fly   326 SPDLEVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKAL--GFPEAL 388
                             ..|..:|:||.|...........|.|:.::..||||:||:  ..|||:
 Worm   250 -----------------GGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKAIVVNAPEAV 297

  Fly   389 VLQAYFACEKNEEQAANFLLSS 410
            |::|||||:||||.|.||:.|:
 Worm   298 VVEAYFACDKNEEAAINFIFSN 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 127/412 (31%)
rad-23NP_496488.2 rad23 3..319 CDD:273167 126/410 (31%)

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