DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and F52C6.2

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_494128.3 Gene:F52C6.2 / 173558 WormBaseID:WBGene00018659 Length:228 Species:Caenorhabditis elegans


Alignment Length:186 Identity:39/186 - (20%)
Similarity:62/186 - (33%) Gaps:82/186 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
            |:::||....:|.|:| ||:....|             |..||.:::|          .||:.| 
 Worm     1 MLLSIKTSTGKTITVE-APKSVKTE-------------VRYKQGVVFA----------VSYDKD- 40

  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSRETRP 130
                                   ..|::...:|:.|.:..:||                  :..|
 Worm    41 -----------------------AGNQIIEMEDTVQDVKIQEA------------------QQAP 64

  Fly   131 L-SSDELIGE--LAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAAS 183
            | .|:|:.|:  ..:||..:|.|.|..:.             |.|.|.|.|..|||
 Worm    65 LRESEEVTGDPIKVEASDTNRNEENPDLA-------------GPPAEPVIRGTAAS 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 39/186 (21%)
RAD23_N 1..76 CDD:176400 16/74 (22%)
UBA1_Rhp23p_like 153..199 CDD:270561 8/31 (26%)
XPC-binding 242..296 CDD:286376
UBA2_HR23A 371..411 CDD:270610
F52C6.2NP_494128.3 ubiquitin 157..224 CDD:365970
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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