DRSC/TRiP Functional Genomics Resources

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Protein Alignment NfI and Nfic

DIOPT Version :9

Sequence 1:NP_995592.2 Gene:NfI / 43782 FlyBaseID:FBgn0042696 Length:766 Species:Drosophila melanogaster
Sequence 2:XP_038934488.1 Gene:Nfic / 29228 RGDID:62016 Length:511 Species:Rattus norvegicus


Alignment Length:566 Identity:210/566 - (37%)
Similarity:265/566 - (46%) Gaps:168/566 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SGQDEFHPFIEALLPYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKTEVKQKW 89
            |..||||||||||||:|::|:|:||||||.||||:||||||||.:|||..||||..||.||||||
  Rat    80 SAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKW 144

  Fly    90 ASRLLGKLRKDITQESREDFVQSIIGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL 154
            |||||.||||||..|.|||||.::.||:...||||||||||||||||||||||||||||||||||
  Rat   145 ASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL 209

  Fly   155 FKAIPLESTDGERLEKNPECLHPGLCVNPYHINVSVRELDLYLANFINTHNSINNTNTTFSTTPG 219
            ||.|||||||||||.|...|.||.|||.|:||.|:|:|||||||.|:...::             
  Rat   210 FKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDA------------- 261

  Fly   220 VRSPHITMYNRSNDPNRKDEVADMKNDVVKQNPYNGVVCNDIILATGVFSSQELWTLSKDLILDE 284
                     .:|:.|.                             |||.|.||   .||.:.||.
  Rat   262 ---------EQSSSPR-----------------------------TGVGSDQE---DSKPITLDT 285

  Fly   285 SNDINLNSSLIKRENVGATYECNTYQINSESSISAAQSLVQSGSIAANPIPLGYSIDFIDQRITQ 349
            ::                      :|          :|.|.||..:..             .:.|
  Rat   286 TD----------------------FQ----------ESFVTSGVFSVT-------------ELIQ 305

  Fly   350 LSQSPLPRTEGPN---GD-----SHDANKIDQSSSPPITSTASDNGTSSFSLIVRATDSSIEDPK 406
            :|::|:....|||   |:     ::|.|.........:.||:|.....      ..:.|..||..
  Rat   306 VSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKR------HKSGSMEEDVD 364

  Fly   407 TSPISLHRYTSLSSRTLAQALPQHSCSLLHSSSTSPTNTLYYPQHNNTRPSQTTSVEEQNRVGSD 471
            |||...: |||.:|.|              |||.:.|..:   :...:.|.:.|.:::     |.
  Rat   365 TSPGGDY-YTSPNSPT--------------SSSRNWTEDM---EGGISSPVKKTEMDK-----SP 406

  Fly   472 KYSTEPQD---ISDFVTYVCQDTSHTTTI---TGSAEN-H-----SFQHSHTLPQGHG------- 517
            ..|..|||   :|.|..:      |...|   :|.|.: |     .|..:..|||...       
  Rat   407 FNSPSPQDSPRLSSFTQH------HRPVIAVHSGIARSPHPSSALHFPATPILPQTASTYFPHTA 465

  Fly   518 --HSPHFQIHQQLRS-AKLTTSPSTHYHSTMLPPMLPPMARPVAII 560
              :.||......|:. ..|...|:|....   ||.|.| |||:..:
  Rat   466 IRYPPHLNPQDPLKDLVSLACDPATQQPG---PPALRP-ARPLQTV 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NfINP_995592.2 NfI_DNAbd_pre-N 25..64 CDD:287494 29/38 (76%)
MH1 85..193 CDD:260161 83/107 (78%)
NficXP_038934488.1 NfI_DNAbd_pre-N 83..119 CDD:371114 28/35 (80%)
MH1 140..241 CDD:412134 79/100 (79%)
CTF_NFI 289..>496 CDD:395689 56/267 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354064
Domainoid 1 1.000 170 1.000 Domainoid score I3661
eggNOG 1 0.900 - - E1_KOG3663
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 297 1.000 Inparanoid score I2636
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D411112at33208
OrthoFinder 1 1.000 - - FOG0000997
OrthoInspector 1 1.000 - - otm46022
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11492
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X590
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.860

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