DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NfI and Nfix

DIOPT Version :9

Sequence 1:NP_995592.2 Gene:NfI / 43782 FlyBaseID:FBgn0042696 Length:766 Species:Drosophila melanogaster
Sequence 2:NP_001357981.1 Gene:Nfix / 18032 MGIID:97311 Length:505 Species:Mus musculus


Alignment Length:585 Identity:225/585 - (38%)
Similarity:281/585 - (48%) Gaps:146/585 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SSGQDEFHPFIEALLPYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKTEVKQK 88
            |...||||||||||||:|::|||:||||||.||||:||||||||.:|||..||||..||.|:|||
Mouse     9 SKPMDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQK 73

  Fly    89 WASRLLGKLRKDITQESREDFVQSIIGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVI 153
            ||||||.||||||..|.|||||.:|.||:...|||||||||||:|||||||||||||||||||||
Mouse    74 WASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVI 138

  Fly   154 LFKAIPLESTDGERLEKNPECLHPGLCVNPYHINVSVRELDLYLANFINTHNSINNTNTTFSTTP 218
            |||.|||||||||||.|:|:|.:|||||.|:||.|:::|||||||.|::|..|            
Mouse   139 LFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES------------ 191

  Fly   219 GVRSPHITMYNRSNDPNRKDEVADMKNDVVKQNPYNGVVCNDIILATGVFSSQELWTLSKDLILD 283
                      .:|:..|::.: ||     :|..|...:...|..:.:||::..||..:|:..:..
Mouse   192 ----------GQSDSSNQQGD-AD-----IKPLPNGHLSFQDCFVTSGVWNVTELVRVSQTPVAT 240

  Fly   284 ESNDINLNSSLIKRENVGATYECNTYQINSESSISAAQSLVQSGSIAANPIPLGYSIDFIDQRIT 348
            .|..   |.||...|:  .:|    |.||..:  ...:|:....|.::...|  .|||  |..: 
Mouse   241 ASGP---NFSLADLES--PSY----YNINQVT--LGRRSITSPPSTSSTKRP--KSID--DSEM- 289

  Fly   349 QLSQSPLPRTEGPNGDSHDANKIDQSSSPPITSTASDNGTSSFSLIVRATDSSIEDPKTSPISLH 413
               :||:.....|......|....|||..|                        .|....|.||.
Mouse   290 ---ESPVDDVFYPGTGRSPAAGSSQSSGWP------------------------NDVDAGPASLK 327

  Fly   414 RYTSLSSRTLAQALPQHSCSLLHSSSTSPTNTLYY---PQHNNTRPSQ-----------TTSVEE 464
            :...|.           .||.|.|..:||.....:   |.....||..           :||:.:
Mouse   328 KSGKLD-----------FCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQ 381

  Fly   465 QNRVGSDKYSTEP---------QD-ISDFVTYVCQDTSHTTTITGSAENHSFQHSHTLPQGHGHS 519
            |    |..|.|.|         || :.:||.:||.|.|...|   ...|.|         |.|..
Mouse   382 Q----SSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT---GQPNGS---------GQGKV 430

  Fly   520 PHFQIHQQLRSAKLTTSPSTHYHSTMLPPMLPPMARPVAIIRSSSDLTLVQSPPTSLPLTAQSTS 584
            |                     .|.:|||. ||:||||.:....|..|  .:.|....||..|.|
Mouse   431 P---------------------GSFLLPPP-PPVARPVPLPMPDSKTT--STAPDGAALTPPSPS 471

  Fly   585  584
            Mouse   472  471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NfINP_995592.2 NfI_DNAbd_pre-N 25..64 CDD:287494 29/38 (76%)
MH1 85..193 CDD:260161 82/107 (77%)
NfixNP_001357981.1 NfI_DNAbd_pre-N 13..49 CDD:371114 29/35 (83%)
MH1 71..173 CDD:381778 81/101 (80%)
CTF_NFI 216..505 CDD:366340 82/350 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850366
Domainoid 1 1.000 170 1.000 Domainoid score I3756
eggNOG 1 0.900 - - E1_KOG3663
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 296 1.000 Inparanoid score I2716
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D411112at33208
OrthoFinder 1 1.000 - - FOG0000997
OrthoInspector 1 1.000 - - otm43933
orthoMCL 1 0.900 - - OOG6_106071
Panther 1 1.100 - - O PTHR11492
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X590
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.760

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