DRSC/TRiP Functional Genomics Resources

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Protein Alignment NfI and nfic

DIOPT Version :9

Sequence 1:NP_995592.2 Gene:NfI / 43782 FlyBaseID:FBgn0042696 Length:766 Species:Drosophila melanogaster
Sequence 2:XP_004911089.1 Gene:nfic / 100491004 XenbaseID:XB-GENE-484367 Length:509 Species:Xenopus tropicalis


Alignment Length:605 Identity:226/605 - (37%)
Similarity:281/605 - (46%) Gaps:164/605 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QDEFHPFIEALLPYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKTEVKQKWAS 91
            |||||||||||||:|::|:|:||||||.||||||||||:|:.||||..||||.|||.||||||||
 Frog    10 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYYKKHEKKMTKEEERGVKDELLNEKAEVKQKWAS 74

  Fly    92 RLLGKLRKDITQESREDFVQSIIGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK 156
            |||.||||||..|.|||||.||.||:.:.||||||||||||||||||||||||||||||||||||
 Frog    75 RLLAKLRKDIRPEFREDFVLSITGKKAASCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK 139

  Fly   157 AIPLESTDGERLEKNPECLHPGLCVNPYHINVSVRELDLYLANFINTHNSINNTNTTFSTTPGVR 221
            .|||||||||||.|...|.:..|||.|:||:|||:|||||||.||...:|..|:           
 Frog   140 GIPLESTDGERLVKASHCSNHQLCVQPHHISVSVKELDLYLAYFIRERDSEQNS----------- 193

  Fly   222 SPHITMYNRSND--PNRKDEVADMKNDVVKQNPYNGVVCNDIILATGVFSSQELWTLSKDLILDE 284
            ||..|:.:...|  |...| :.|.:...|               .:||||..||..:|:..::..
 Frog   194 SPRTTIGSDLEDTKPINLD-ITDFQESFV---------------TSGVFSVTELIQVSRTPVVSG 242

  Fly   285 SNDINLNSSLIKRENVGATYECNTYQINS---------ESSISAAQSLVQSGS----IAANP--- 333
            :..   |.||      |.......|.:|.         .|:.|:.....:|||    |..:|   
 Frog   243 TGP---NFSL------GELQGHLAYDLNPTGTGMRRTLPSTSSSGSKRHKSGSMEDDIDTSPGGE 298

  Fly   334 ------IPLGYSIDFIDQ---------RITQLSQSPLPRTEGPNGDSHDANKIDQSSSPPITSTA 383
                  .|.|.:.::.|.         :.::|.:||.                 .|.||..||..
 Frog   299 YYTSPSSPTGSNRNWADDVEGGMSPTVKKSELDKSPF-----------------HSPSPQDTSPR 346

  Fly   384 SDNGTSSFSLIVRATDSSIEDPKTSPISLHRYTSLSSRTLAQALPQHSCSLLHSSSTSPTNTLYY 448
            ....|.....::.........|.|| .:||..||       ..|||      .:|:..|...:.|
 Frog   347 ISGFTQHHRPVIAVHSGLARSPHTS-TTLHFPTS-------SLLPQ------AASTYFPHTAIRY 397

  Fly   449 PQHNNTRPSQTTSVEEQNRVGSDKYSTEPQD-ISDFVTYVCQDTSHTT-TITGSAENHSFQHSHT 511
            |.|.|                       ||| :.|.|:..|:.:|... .:.||.:         
 Frog   398 PPHLN-----------------------PQDPLKDLVSLACETSSQQPGPLNGSGQ--------- 430

  Fly   512 LPQGHGHSPHFQIHQQLRSAKLTTSPSTHYHST-MLPPMLPPMARPVAIIRSSSDLTLVQ----S 571
                                   ...|:||.|| ||.|  ||...|...:.|.:..|...    |
 Frog   431 -----------------------VKVSSHYISTQMLAP--PPPGMPRLSLSSDTKSTTASDGSTS 470

  Fly   572 PPTSLPLTAQSTSLNDNSCI 591
            .|||...:|.||...:.|.:
 Frog   471 SPTSPTYSAPSTPPTNRSFV 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NfINP_995592.2 NfI_DNAbd_pre-N 25..64 CDD:287494 30/36 (83%)
MH1 85..193 CDD:260161 84/107 (79%)
nficXP_004911089.1 NfI_DNAbd_pre-N 10..47 CDD:371114 30/36 (83%)
MH1 69..173 CDD:381778 81/103 (79%)
CTF_NFI 217..508 CDD:366340 79/386 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 171 1.000 Domainoid score I3696
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 300 1.000 Inparanoid score I2643
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D411112at33208
OrthoFinder 1 1.000 - - FOG0000997
OrthoInspector 1 1.000 - - oto104806
Panther 1 1.100 - - O PTHR11492
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3993
SonicParanoid 1 1.000 - - X590
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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