DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP102A and BEM3

DIOPT Version :9

Sequence 1:NP_001245416.1 Gene:RhoGAP102A / 43781 FlyBaseID:FBgn0259216 Length:1256 Species:Drosophila melanogaster
Sequence 2:NP_015210.1 Gene:BEM3 / 855988 SGDID:S000006036 Length:1128 Species:Saccharomyces cerevisiae


Alignment Length:1200 Identity:226/1200 - (18%)
Similarity:375/1200 - (31%) Gaps:404/1200 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ENEESVNCLRSPMAAVKKRSGPLDIALDEANDVSKIWSLP----LGNASSMRK---PMIFAS--E 61
            |.:..:..|..|:..:   |.||....|.|.:.|...::|    ..|.|..||   .||...  |
Yeast   117 ERKAHIKSLNLPIPTL---SPPLQQGSDVALETSVTPTVPQIGVTSNTSISRKHLQNMILNDEIE 178

  Fly    62 HSEGVASPNKVRRRSTKDKEKKRERWLLTRKTWRYMTDAGRKLIPDGYQTGSGNHDLIEDQFQRV 126
            .:...:||..:.|..:...:...|:......:..|.|                         .|:
Yeast   179 ANSSFSSPKIINRSVSSPTKIHSEQLASPAASVTYTT-------------------------SRI 218

  Fly   127 CLSEPSFILWSRRTSYPGAFSCSKRRLKPLLRHASASRRKQTVDATKDYHIADRVIELLQTYLKL 191
            .:..|                 :|....||.....:.:....:.|..:.|        |.:.|| 
Yeast   219 TIKSP-----------------NKGSKSPLQERLRSPQNPNRMTAVINNH--------LHSPLK- 257

  Fly   192 RDAYKTTTLLGTKTVRPDQTSSPSAQRPN---FKNNGDNHQVISSG------TSIQTELLSLLKL 247
                     ..|.....:.|.|.|.|..|   .||:.....:.||.      ||......|||::
Yeast   258 ---------ASTSNNLDELTESKSQQLTNDAIQKNDRVYSSITSSAYTTGTPTSAAKSPSSLLEV 313

  Fly   248 LSNCPLFTHEGIQLKFGDAPLSILEDKVLLKKIYSALKKQQLHRTLHSKDPYQAN---------- 302
            ...      |...|.|..|....|:|...|  :.|:..::.|..| .||||....          
Yeast   314 KEG------ENKALGFSPASKEKLDDFTQL--LDSSFGEEDLVNT-DSKDPLSIKSTINESLPPP 369

  Fly   303 ------FSTSLSCLIKNGKELSRGNTDSNRSNKLLHDNFFC-LMKCDTKPIIPSPKTEFFLDLNK 360
                  ||.:.|..|||...||.........|| ..|||.. ..|...||::.|........|:.
Yeast   370 PAPPTFFSPTSSGNIKNSTPLSSHLASPVILNK-KDDNFGAQSAKNLKKPVLTSSLPNLSTKLST 433

  Fly   361 VPQNFEL-----------------------KNKLNS---------------NGQSVERIQKTCGT 387
            ..||..|                       .|.||:               :..||..::....:
Yeast   434 TSQNASLPPNPPVESSSKQKQLGETASIHSTNTLNTFSSTPQGSLKTLRRPHASSVSTVKSVAQS 498

  Fly   388 QTN----FIQLSELKTLAEQYNLMVT----NCDN---TLKLLEEPSKQDCSKSSHLIFRRSSLDE 441
            ..:    |:|..:..|:  |..::.|    |.|:   .:.:::..|.::..|.|..|.:...||.
Yeast   499 LKSDIPLFVQPEDFGTI--QIEVLSTLYRDNEDDLSILIAIIDRKSGKEMFKFSKSIHKVRELDV 561

  Fly   442 DISQSVSD-------------TIKRYLNMARKKSMQDSDSNRFKSINYDKNL-----RNIKAKGV 488
            .:...|.|             |:.......||..:....::.|....:.||:     :.|....|
Yeast   562 YMKSHVPDLPLPTLPDRQLFQTLSPTKVDTRKNILNQYYTSIFSVPEFPKNVGLKIAQFISTDTV 626

  Fly   489 LNPP----GISAG--LHKAVQTL---NAWPLIALDFIRGNESSLNLKNAHLEWLRLEDERSHMQL 544
            :.||    .:..|  |.:..:||   :.| .:....:|.:...|..||...|.::|  .:|.::|
Yeast   627 MTPPMMDDNVKDGSLLLRRPKTLTGNSTW-RVRYGILRDDVLQLFDKNQLTETIKL--RQSSIEL 688

  Fly   545 ------------------ERDKNPIELRSK---------------------VNPLQIASPANTSS 570
                              |..|:.:...:|                     ::|.|..|.:::.:
Yeast   689 IPNLPEDRFGTRNGFLITEHKKSGLSTSTKYYICTETSKERELWLSAFSDYIDPSQSLSLSSSRN 753

  Fly   571 YSKCTSAP--TSPTSHSKLEKAIRTSSGLLSSSSQFISNILHGHNNAGNQFNTLTDKLPDCNQSH 633
            .:...||.  ::.|.|||...|..::    :.:..:::::...:||..|..|:..      |.::
Yeast   754 ANDTDSASHLSAGTHHSKFGNATISA----TDTPSYVTDLTQEYNNNNNISNSSN------NIAN 808

  Fly   634 ATASMQKSKSLSNVGQFVAKRMWRSRSKSQNKRSYLKSSIPTLKWYPSEHFLWISESGESFQIVE 698
            :........|.||   |:|.....:..:..::|:.::|..|..|                     
Yeast   809 SDGIDSNPSSHSN---FLASSSGNAEEEKDSRRAKMRSLFPFKK--------------------- 849

  Fly   699 TNLTRLSKIESDIVKNFALEKIQELNIGNIEDLKISPQKRRCVPKKKSLTTSFFDNGKKDDQNPR 763
              ||..:...:.|          .:.|.|..|...||......|.||.:..|...| .....:..
Yeast   850 --LTGPASAMNHI----------GITISNDSDSPTSPDSIIKSPSKKLMEVSSSSN-SSTGPHVS 901

  Fly   764 SVLFGTSLECCLERDSKRNVTMEDRSKYSLLSMFRGSGSTPGSVLKLNDNVRSCESLPSKSLEYG 828
            :.:||:|||.||...|.:...:.|                                         
Yeast   902 TAIFGSSLETCLRLSSHKYQNVYD----------------------------------------- 925

  Fly   829 STELSAYVRGSFSNISKPLASLSQSENEDTELNFVKAYQEHSQLMVPIFVNNCIDYLEDN-GLQQ 892
                                                         :|..|..|::||..| |:|:
Yeast   926 ---------------------------------------------LPSVVYRCLEYLYKNRGIQE 945

  Fly   893 VGLFRVSTSKKRVKQLREEFDKDIYFGISVDTCPHD--------------------VATLLKEFL 937
            .|:||:|.|...:|.|:|.|||:    ..||.|.::                    |:.|||.:|
Yeast   946 EGIFRLSGSSTVIKTLQERFDKE----YDVDLCRYNESIEAKDDEASPSLYIGVNTVSGLLKLYL 1006

  Fly   938 RDLPEPLLCNTLYLTFLK-TQRIRNRRLQLE-AISHLIRLLPIPHRD--TLYVLLVFLAKVAAHS 998
            |.||..|..:..:|:|.: .....|..:|:. ....||....:||.:  .:|.|...|.::..:|
Yeast  1007 RKLPHLLFGDEQFLSFKRVVDENHNNPVQISLGFKELIESGLVPHANLSLMYALFELLVRINENS 1071

  Fly   999 DDIWSTEGCCLTLGNKMDSYNLATVFAPNI 1028
            .            .|||:..||..||:|.:
Yeast  1072 K------------FNKMNLRNLCIVFSPTL 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP102ANP_001245416.1 RhoGAP 874..1069 CDD:295372 51/179 (28%)
BEM3NP_015210.1 PX 520..622 CDD:214610 17/101 (17%)
PH_Bem3 633..741 CDD:270096 16/110 (15%)
RhoGAP 904..1110 CDD:413382 60/287 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 89 1.000 Inparanoid score I1561
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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