DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP102A and LOC100005008

DIOPT Version :9

Sequence 1:NP_001245416.1 Gene:RhoGAP102A / 43781 FlyBaseID:FBgn0259216 Length:1256 Species:Drosophila melanogaster
Sequence 2:XP_001344168.4 Gene:LOC100005008 / 100005008 -ID:- Length:958 Species:Danio rerio


Alignment Length:1075 Identity:203/1075 - (18%)
Similarity:360/1075 - (33%) Gaps:359/1075 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 AQRPNFKNNGD----------NHQVISSGTSIQTELLSLLKLLSNCPLFTHEGIQLKFGDAPLSI 270
            ||:|:.:.|||          |.|:.:..|.||.|        ::....:|:..........|.:
Zfish    26 AQQPSIERNGDAPLPPPDVQINTQMKTQETDIQHE--------ASVDGSSHQSTSASVPPDLLDV 82

  Fly   271 LEDKVLL----KKIYSALKKQQLHRTLHSKDPYQANFSTSLSCLIKNGKELSRGN---------- 321
            ...:.|:    ..|.|.|..:.| |:..|.|...|:.|.      |..:.||:|.          
Zfish    83 KSSETLVWPSSISISSGLSVEAL-RSADSDDSPAASDSP------KTHQHLSKGQHNVQKASKTD 140

  Fly   322 --TDSNRSNKLLHDNFFCLMKCDTKPIIP--------------------SPKTEF------FLDL 358
              ||...:|:.:|.....|.|...:|..|                    ..::||      :||:
Zfish   141 KLTDVQWANEEIHLQSESLQKMPDRPKKPRAATIRVSRKKQTLSGQKSDQTRSEFTVSQSSWLDV 205

  Fly   359 NKVPQNFELKNKLNSNGQSVERIQKTCGTQTNFI-QLSELKTLAEQ-------------YNLMVT 409
            .|..::..|...|:.|..|:.:  |.....|.:: .::.:..:::|             :..|..
Zfish   206 WKGRKHMVLWATLDGNLMSMWK--KRTDKFTEYVFHVASVTNISKQEHGRFSIHLQKKHFEFMAH 268

  Fly   410 NC---DNTLKLLEE---------PSK------QDCSKS------SHLIFRRSSLDEDIS-----Q 445
            |.   |..|..|.:         |.|      :|..|.      .|.::..|| .||.:     .
Zfish   269 NAAVQDGWLHSLYDSRGREAIAAPKKHGPLSMKDRRKKVYSAICGHSLWIYSS-KEDFNLGLGMM 332

  Fly   446 SVSDTIKRYLNMARKKSMQ---------------DSDSNR-----FKSINYDKNLRNIKAK---- 486
            .||      :|:|..||..               .:||::     .:|:|  ..:||..:.    
Zfish   333 CVS------MNIASVKSTGRYGFSLITPYRTFNFSADSSKEASAWLESLN--DVIRNALSYSEVA 389

  Fly   487 ---------------GVLNPPGIS-----------AGLHKAVQTLNA-----------W--PLIA 512
                           |..||...|           ||.|:::.:..:           |  |||.
Zfish   390 LRLWSSPCNKVCADCGAANPEWASVNLLVVICEACAGAHRSMGSSRSKVRGLKLDDKVWTEPLIQ 454

  Fly   513 LDFIRGNESSLNL------KNAHLEWLRLEDERS-------HMQLERDKNPIELRSKVNPLQ--- 561
            |..:.||:::.|:      ....:..|...|:|:       |..|.|..:|:....|:...:   
Zfish   455 LFVLHGNKTANNVWGHNIPPTEQISPLASPDQRAEFILAKYHKGLYRKAHPLAASQKLLDQRLRE 519

  Fly   562 -IASPANTSSYS-KCTSAPTS-PTSHSKLEKAIRTSSGLLSSSSQFISNILHGHNNAGNQFNTLT 623
             :..||...:.| .|:.|..| .:|..:|:.||    .:..|:.|.:...|..|    |:|    
Zfish   520 VVCGPAVEETVSLLCSGAKVSCSSSDPELKSAI----AVAESAGQALQTELLRH----NEF---- 572

  Fly   624 DKLPDCNQS-HATASMQKSKSLSNVGQFVAKRMWRSRSKSQNKRSYLKSSIPTLKWYPSEHFLWI 687
            .:.||..|: |:...|::                            |...:      ..|.||:.
Zfish   573 VEAPDFEQTRHSEEQMEE----------------------------LHGKL------DEERFLFS 603

  Fly   688 SES-GESFQIVETNLTRLSKIESDIVKNFALE--KIQELNIGNIED-LKISPQKRRCVPKKKS-- 746
            .|: ..::.:::.         :::|..|...  :..:..:..:.| |..|..:|..:....:  
Zfish   604 QENQSAAYDVLDL---------TEVVSVFDCSDGETHQFEVSTLTDRLTCSADERNALLSHMTHI 659

  Fly   747 LTTSFFDNGKKDD------QNPRSVLFGTSLE-----CCLERDSKRNVTMEDRSKYSLLSMFRGS 800
            :.....|..|:||      .:..|:..|.:|:     |.|:.......|::.||:.:|:      
Zfish   660 MKVVLADTVKQDDLLGVFAVSKLSIREGAALQFAEVWCSLQEGEMSVHTLQLRSRETLI------ 718

  Fly   801 GSTPGSVLKLNDNVRSCESLPSKS---LEYGST------ELSAYVRGSFSNISKPLASLSQSENE 856
                     ||...| |....|::   ||:...      ||....|.....:.|.::|.:..:..
Zfish   719 ---------LNAQTR-CYLQSSENCILLEFPDRTFHMQFELEHSCRRWHELLQKAMSSSTDGQQR 773

  Fly   857 DTELNFVKAYQEHSQLMVPIFVNNCIDYLEDNGLQQVGLFR-----------VSTSKKRVKQLRE 910
            ...              ||..|:.||.::..:||...||:|           |.|.:...|:...
Zfish   774 AGS--------------VPTSVHRCISHITLHGLMVEGLYRRCGIAPQISKLVDTLRVSPKEAVL 824

  Fly   911 EFDKDIYFGISVDTCPHDVATLLKEFLRDLPEPLLCNTLYLTFLKTQRIRNRRLQLEAISHLIRL 975
            :.|:     :||    .||:..||:.||.  ..|:..|....:.....:...:::|:....|::.
Zfish   825 QTDE-----LSV----LDVSGALKQILRQ--SELIPQTHRPHWQNAAALPGEKVRLQTYRELLKQ 878

  Fly   976 LPIPHRDTLYVLLVFLAKVAAHSDDIWSTEGCCLTLGNKMDSYNLATVFAPNILRSTHLTFSRDK 1040
            ||..:..||..|...|..|..||..            |:|.::|||.:|.....:...:.     
Zfish   879 LPPDNIATLSALCAHLNNVQKHSQT------------NRMTAHNLAVIFVVIFFQELAMN----- 926

  Fly  1041 EQENMIDAINVVRTMINHYEEIFNISAELLNVIYT 1075
                 |:.:.:.|.:|.::..||....|....|.|
Zfish   927 -----INMVQMTRELILNHTHIFRSPVETDGAIVT 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP102ANP_001245416.1 RhoGAP 874..1069 CDD:295372 46/205 (22%)
LOC100005008XP_001344168.4 PH-like 291..375 CDD:302622 17/90 (19%)
PH 292..380 CDD:278594 19/96 (20%)
ArfGap 386..503 CDD:279720 21/116 (18%)
RhoGAP 769..939 CDD:295372 44/216 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
10.960

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