DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31999 and ltbp1

DIOPT Version :9

Sequence 1:NP_001284712.1 Gene:CG31999 / 43777 FlyBaseID:FBgn0051999 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_012819247.1 Gene:ltbp1 / 100488719 XenbaseID:XB-GENE-488058 Length:1698 Species:Xenopus tropicalis


Alignment Length:888 Identity:241/888 - (27%)
Similarity:325/888 - (36%) Gaps:287/888 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SDSISGYIRKCCINGLRHARTTASCKKID------IAPTIIPQLWLGLCHSTL-EVCCSRELDHQ 81
            |..:|..|.: |..|.|....| .|:.|:      :.|.       |.|.:|: ...|.      
 Frog   572 SQHVSSQIME-CPQGYRRINAT-FCQDINECHMQGVCPN-------GDCLNTMGSYRCK------ 621

  Fly    82 DCELGRLAALDGTRCDGEGN-VTSSSYATCCR------SCQIGLAVKASKANCKDPLFSFIFLIE 139
             |::|.:..|..:.|..:.| :.|.....|.|      .|...:||:.|:..|            
 Frog   622 -CKVGYVPDLSLSSCVVDNNPIVSEEKGPCYRFFSPGKQCMHPIAVQLSQQIC------------ 673

  Fly   140 SYRACCY---------------GSADFKD-----------------------------QPGI--- 157
                ||.               |:|.||:                             ||.:   
 Frog   674 ----CCTVGKAWGPYCDRCPVPGTAAFKEICPGGMGYTVPNVPRNPIRVPPPNRPITVQPPVRTT 734

  Fly   158 -------DEIDKANSITDEGELPFVSEEDMNVTIVLTGDDDICGKIENLCAHIC---ENTFDAYQ 212
                   :|..:|.|:: |...|.|.|.....|     |||        .||:.   ....:..|
 Frog   735 HAPIVTKEEPIEALSVS-ERNYPHVPERKGEAT-----DDD--------QAHVPFEERRVVEGGQ 785

  Fly   213 CKCHPGFM---LDNN------------------NVTCSPMKTQICPSGYNLDKLDNKCIDIDECR 256
            .:..||..   ||..                  :|:.:.....|.|:         :..:|:||.
 Frog   786 PQVSPGISTVNLDGQFPVVVEKSSPPVPVALAPDVSTASASQVIAPT---------QVTEINECA 841

  Fly   257 EDLHDCKSSQYCHNTNGGYHCLNVKEKECPPGFHYDHDYDACKDDYKCKDRKCVKIQSCDKGFSL 321
            .|::.|.... |.|...||.||                   |...||..::|.            
 Frog   842 VDVNICGEGN-CINLPVGYTCL-------------------CFTGYKLNEQKT------------ 874

  Fly   322 HNGTCSDIDECSHKSLNNCHVNSNQECVNTVGSYSCNCLPGFNLDATLNKCVDINECSINNHNCL 386
               .|.||:||:    .:.|:.|:..|.||.|.:.|.|..|:..:.....|||:||| :..|.|.
 Frog   875 ---KCVDINECA----EDPHLCSHGRCENTKGRFLCICHAGYMANEQGIDCVDVNEC-LRPHACE 931

  Fly   387 PTQRCDNTIGSYICTRLQSCGTGYTLNAETGNCDDDDECTLSTHNCPSNYDCHNTRGSFRCYRKI 451
            ....|.|||||:.|   :.|..|:..| :.|.|:|.:|| |:...||.: .|.|:.||:.|    
 Frog   932 EDGLCINTIGSFGC---EYCEKGFRHN-QRGECEDINEC-LNQLTCPHD-RCVNSVGSYSC---- 986

  Fly   452 STMLTTRTTSTTVPPLSLENARRSFTSRYPYPLAVHPEYSQNNDSISTNRRVDCSPGFYRNTL-G 515
                                                               |.|..||  |.| |
 Frog   987 ---------------------------------------------------VPCPDGF--NGLNG 998

  Fly   516 ACIDTNECMEQ-NPCGNHERCINTNGHFRCESLLQCSPGYKSTVDGKSCIDIDECDTGEHNCGER 579
            .|.|.|||.|. :.|.|.: |.|..|.:||    .|..||..|.|||.||||:||.:|  .....
 Frog   999 QCFDINECQEDTSVCANGD-CSNLEGSYRC----TCHRGYDVTSDGKQCIDINECQSG--TLCLN 1056

  Fly   580 QICRNRNGGFVCSCPIGHELKRSIGGASTCVDTNECALEQRVCPLNAQCFNTIGAYYCECKAGFQ 644
            .:|:|..|.|.|||..|::|..|   ...|.|.:||. ...:|. |.||.||.|::.|.|..|::
 Frog  1057 GLCQNTEGSFECSCNEGYQLAPS---GDQCHDIDECQ-NTNLCS-NGQCRNTRGSFSCICHQGYK 1116

  Fly   645 KKSDGNNSTQCFDIDECQVIPGLC--QQKCLNFWGGYRCTCNSGYQLGPDNRTCNDINECEVHKD 707
            ..:||.   ||.||||||....:|  ...|.|..|.|.|||..|:.| .|...|.||||||   .
 Frog  1117 VSADGE---QCEDIDECQEEAEVCLGGGSCHNTDGSYECTCPDGFLL-VDGIRCQDINECE---Q 1174

  Fly   708 YKLC--MGLCINTPGSYQCSCPRGYILAADMNTCRDVDECATDSINQVCTGRNDICTNIRGSYKC 770
            ..||  .|.|:||.|||.|.|.:|:..:|:..:|.||||||    |....|...||.|..|||:|
 Frog  1175 PDLCNPNGECLNTEGSYHCICEQGFTTSANGRSCEDVDECA----NTTQCGSQGICENTDGSYRC 1235

  Fly   771 TTVNCPLGY--SIDPE---QKNRCRQNLNFCEGEECYTQPSAF 808
            .   |..||  |.|.:   ..|.|......|....|.....:|
 Frog  1236 L---CYQGYQDSFDGQGCVDVNECEMLSGVCGEARCENVEGSF 1275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31999NP_001284712.1 vWFA <189..227 CDD:294047 10/61 (16%)
EGF_CA 251..293 CDD:238011 11/41 (27%)
EGF_CA 328..>363 CDD:214542 12/34 (35%)
EGF_CA 519..564 CDD:214542 19/45 (42%)
EGF_CA 565..601 CDD:238011 14/35 (40%)
EGF_CA 611..651 CDD:284955 15/39 (38%)
vWFA <655..695 CDD:294047 18/41 (44%)
cEGF 678..701 CDD:289433 10/22 (45%)
EGF_CA 698..>730 CDD:214542 17/33 (52%)
cEGF 721..744 CDD:289433 9/22 (41%)
ltbp1XP_012819247.1 EGF_CA 596..>626 CDD:214542 7/43 (16%)
TB 659..701 CDD:366245 11/57 (19%)
cEGF 858..881 CDD:372248 11/56 (20%)
vWFA <872..916 CDD:381780 15/62 (24%)
EGF_CA 920..957 CDD:214542 16/41 (39%)
EGF_CA 962..>993 CDD:214542 13/87 (15%)
EGF_CA 1002..1033 CDD:238011 13/35 (37%)
cEGF 1024..1047 CDD:372248 13/26 (50%)
EGF_CA 1044..1075 CDD:214542 13/32 (41%)
EGF_CA 1085..1125 CDD:214542 16/44 (36%)
EGF_CA 1126..1167 CDD:214542 17/41 (41%)
EGF_CA 1168..1209 CDD:214542 19/43 (44%)
EGF_CA 1210..1243 CDD:214542 18/39 (46%)
TB 1344..1387 CDD:366245
TB 1522..1565 CDD:366245
EGF_CA 1642..>1676 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.