DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and abcd4

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_001070185.2 Gene:abcd4 / 767748 ZFINID:ZDB-GENE-050517-30 Length:604 Species:Danio rerio


Alignment Length:702 Identity:176/702 - (25%)
Similarity:295/702 - (42%) Gaps:188/702 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NNLVEPGLNKEFLKHLQMLAKIMIP--------------------QAFCYETGLLSVHTFCLISR 142
            :::..|.|:.:||:....:.||:.|                    |...|:.||:....:.::| 
Zfish     7 SSVKRPKLDWKFLQRFYSILKILFPSWSNQNVRMFMTLLGVTLSVQLVIYQVGLIPSQFYRVLS- 70

  Fly   143 TFLSIYVAALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLE----SKLSLAFRTR 203
                      |.:..||   ||:..||:||:          .:||.::.|:    |.|.:.:|..
Zfish    71 ----------ERSYGKF---KDLVVFAVVLI----------LINSTLKSLDQYICSLLYVRWRKT 112

  Fly   204 LVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLYSSL----------TKPCF 258
            |....:.||||.:.||.::.|...|:|.|.|:::|:......::.:.|.|          |..||
Zfish   113 LTEDLHHLYFKGRVYYTLNILCKDIDNPDQRISQDVERLCKQMSTMASRLLITPFTVTYYTYQCF 177

  Fly   259 D------------LMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVSPKFGQLVSEEA 311
            :            ..::|..:.:        |:.||.:|                    ::.|:.
Zfish   178 NSAGWIGFVSIFSYFVVGTIINK--------ILIGPIVS--------------------MLVEQE 214

  Fly   312 NRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQFFMKYV 376
            ...|..|..|.:|..|||..|||....||..:..:....|::...::.|::||..:....| .|:
Zfish   215 KLEGDFRFKHMQIRVNAESAAFYRASNVEHMRTDRKLQMLLSTQRSLMNKELWLYLGVNTF-DYM 278

  Fly   377 WSGTGMIMVSLPILTGSDVGLGTVPNTAISESRVSERTQYLTTAR-NLLISA-ADAIERLMSSYK 439
            .|....|::::||..|:                    ..:||... :.|||. |.....|::.:.
Zfish   279 GSILSYIVIAIPIFAGN--------------------YDHLTPGELSALISKNAFVCIYLINCFT 323

  Fly   440 EIVSL-------AGYTFRVAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPIAKGRIIYS 497
            :::.|       ||||.|:..:.:...:.|                           .|.|..|.
Zfish   324 QLIDLSTTVSDVAGYTHRIGELQEAMADIA---------------------------KKQRDEYQ 361

  Fly   498 DDP-----KNMSISLRAVP-----VVTPNC-------DIVVPKLTLCIEPGVHLLITGPNGCGKS 545
            .||     .|....|::||     |:...|       :::|..|||.|..|.|||:.|..|.||:
Zfish   362 YDPVSKAESNSDRELQSVPADTAFVLDRLCYKSPLSEELLVKDLTLSISQGTHLLVVGNTGTGKT 426

  Fly   546 SLFRILSGLWPIYAGELHI-----PRPVKDVPCMFYIPQRPYMSIGSLCDQIIYPDTREDMKRKH 605
            ||.|:|:.||....|.:.:     ||.      :.::||:.|::.|:|.||||||..........
Zfish   427 SLLRVLNSLWEPCRGSVQMTTCFGPRG------LMFLPQKAYLTDGTLRDQIIYPLKDIYPSSGS 485

  Fly   606 ITENELRSILKMVSLEHIAQR----DSFDVVRDWKDILSGGEKQRMAIARLFYHRPRYALLDECT 666
            |.:..:...|::|.|.::..|    |: :|..:|.|:||.||.||:..|||.|.:|::|:|||.|
Zfish   486 IDDERILKYLELVGLSNLLTRIGGLDT-EVTWNWYDVLSPGEMQRLCFARLLYLQPKFAVLDEAT 549

  Fly   667 SAVSIDVESSIYEIAKGMGITLLTITHRPTLWKYHTHILEFDGLGNWQFRKM 718
            ||::.:.|..:|...|..|:||:::.||.||.|:|..:|...|.|.|:..|:
Zfish   550 SALTEEAEGQLYNACKQQGMTLISLGHRSTLEKHHDVMLRLCGGGQWELSKL 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 175/697 (25%)
abcd4NP_001070185.2 ABC_membrane 14..292 CDD:294371 71/330 (22%)
YddA 18..603 CDD:226646 174/691 (25%)
ABCD_peroxisomal_ALDP 385..596 CDD:213190 77/217 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100236
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.720

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