DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and CG11898

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_651679.2 Gene:CG11898 / 43451 FlyBaseID:FBgn0039645 Length:1320 Species:Drosophila melanogaster


Alignment Length:774 Identity:155/774 - (20%)
Similarity:270/774 - (34%) Gaps:228/774 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 IAEKCEHNGFTKHAFS---YALVTSAILALTIKVTIPYVKNVNTTSSVRTQKGKTNGQLSPSTRD 72
            :.|:.:.|..||..|.   :.:.|..||...::      :|::.:....|:         ||...
  Fly     4 VHEQRQPNPVTKANFFSKWFFIWTREILVKGLQ------RNLDPSDLYETE---------PSLES 53

  Fly    73 SSEEDFKLAEAEKLLVAQQLKKKATNNLVEPGLNKEFLKHLQMLAKI----MIPQAFCYETGLLS 133
            :....|.|...|     |:||:...|             .|:|:.|.    .:|.:..|....::
  Fly    54 TQVSSFLLGHWE-----QELKRSKPN-------------VLRMIFKAYGWSFVPASIVYSIMAIA 100

  Fly   134 VHTFCLISRTFLSIYVAALEGALVKF-------IVRKDIKQFALVLLKWFGIA----IPATFVNS 187
            |||           ....:.|.||.|       |.:.....:|:      |:.    |...|.:.
  Fly   101 VHT-----------TQPLMLGGLVSFFSESTGKITKHSAYLYAM------GVVLCSLISGLFFHP 148

  Fly   188 MIRFL---ESKLSLAFRTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHL 249
            .:::|   .|::.||....:.|...|:.....|    |.:.|   .|...:..|:..|..|....
  Fly   149 FMKYLFRVGSRVRLACAGLVYRKFLRVSVAADN----SGVSG---YAISLMATDLPTFNESFYCF 206

  Fly   250 YSSLTKPCFDLMLIGLALMRSSKKMKANIITGPAL-----SIGVIALTAHILRIVSPKFGQLVSE 309
            :.....|...::.:.:..         .:|..||:     .:..|.|.|...|.::         
  Fly   207 HELWRGPLEGVVFVYIIY---------QLIGWPAVVGLGTIVAFIPLQAWAARAIA--------- 253

  Fly   310 EANRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQFFMK 374
               ||             ....|..|..:|::.      |.::..|..| ....|    |:.|.|
  Fly   254 ---RY-------------KRSSADVGDERVKLM------NEIIAAMQLI-KMYAW----EKSFAK 291

  Fly   375 -----------------YVWSG---TGMI-----MVSLP--ILTGSDVGLGTVPNTAISESRVSE 412
                             |:::|   ||||     .:||.  :.||.                   
  Fly   292 LIGKVRKEEMDSIRGSTYIYAGLQCTGMISKLSLFLSLVTYVFTGD------------------- 337

  Fly   413 RTQYLTTARNLLISAA--DAI-ERLMSSYKEIVSLAGYTFRVAGMMDVF----EETALGVYCKTS 470
                :.|::.:.|.|:  |.: :.|:.|:...:::...||.||..:..|    |..|.|......
  Fly   338 ----IVTSQKVFIVASYYDHLNDSLLHSWPLAINMWVETFVVANRVKDFLFQHENPADGGVHNFK 398

  Fly   471 VMESNQSNGIIEFRNGKPIAKGRII------YSDDPKNMSISLRAVPVVTPNCDIVVPKLTLCIE 529
            ..|.|..:|....|..||.|:.:.|      .|.|.|......|.:..|           :...:
  Fly   399 EAEDNPEHGNFFGRTHKPKAEVKSITVHKLSASWDQKKQEKRHRHIEDV-----------SFQAQ 452

  Fly   530 PGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRPVKDVPCMFYIPQRPYMSIGSLCDQIIY 594
            ....:.|.|..|.|||:|.:::.|...|.:|.:.:.      ..:.|.||.|::..|||.|.|::
  Fly   453 DQQFVGIVGTVGAGKSTLLQVILGELDIISGSVEVN------GVLSYAPQEPWLLRGSLRDNILF 511

  Fly   595 PDTREDMKRKHITENELRSILKMVSLEH-IAQRDSFDVVR--DWKDILSGGEKQRMAIARLFYHR 656
            .:..:        |.....:|::..|:. :.|....|..|  :....||||:|.|:::||..|.:
  Fly   512 TEPYD--------EQRYLEVLRVCHLDRDVEQLPLGDSTRVGEGGASLSGGQKARVSLARAVYRK 568

  Fly   657 PRYALLDECTSAVSIDVESSIYE------IAKGMGITLLTITHRPTLWKYHTHILEFDG 709
            ....|||:..|||...|...:.:      ::|.:.|   .:|||..|.::..|::..:|
  Fly   569 ADIYLLDDPLSAVDSHVSKMLLDRCLNEFLSKKIRI---LVTHRVQLLRHVDHLVLLEG 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 143/707 (20%)
CG11898NP_651679.2 CFTR_protein 9..1268 CDD:273530 154/769 (20%)
ABC_membrane 92..358 CDD:294371 60/357 (17%)
ABCC_MRP_domain1 423..626 CDD:213217 55/230 (24%)
ABC_membrane 762..988 CDD:294371
ABCC_MRP_domain2 1042..1261 CDD:213211
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1117
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.860

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