DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCD and Abcd2

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_036124.2 Gene:Abcd2 / 26874 MGIID:1349467 Length:741 Species:Mus musculus


Alignment Length:727 Identity:379/727 - (52%)
Similarity:482/727 - (66%) Gaps:51/727 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KCEHNGFTKHAFSYALVTSAILALTIKVTIPYVKNVNTTSSVRTQKGKTNGQLSPSTRDSSEEDF 78
            |...:|..|.|   |.:.:|..||  |...|.:             ||...|  |..|.:..|.:
Mouse    13 KWTRSGAAKRA---ACLVAAAYAL--KTLYPII-------------GKRLKQ--PGHRKAKAEAY 57

  Fly    79 KLAEAEKLLVAQQL--KKKATNNLVEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVHTFCLIS 141
            ..||..::|...::  ||.|      ||||..|.|.|..|.||:.|:....|||.|.:|:..|||
Mouse    58 SPAENREILHCTEIICKKPA------PGLNAAFFKQLLELRKILFPKLVTTETGWLCLHSVALIS 116

  Fly   142 RTFLSIYVAALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAFRTRLVR 206
            |||||||||.|:|.:||.||.|..:.|.:.|:||..||||||||||.||:||.||:||||||||.
Mouse   117 RTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLALAFRTRLVD 181

  Fly   207 HSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLYSSLTKPCFDLMLIGLALMRSS 271
            |:|..||.||.||:|.|:|||:.|.|..|||||.:|:.|||||||:||||..|::|....|:|::
Mouse   182 HAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTA 246

  Fly   272 KKMKANIITGPALSIG-VIALTAHILRIVSPKFGQLVSEEANRYGYLRHIHSRIITNAEEIAFYG 335
            ....|:.| ||.|..| |:..||.:|:..|||||.||:|||:|.||||::|||||.|.||||||.
Mouse   247 TSRGASPI-GPTLLAGLVVYATAKVLKACSPKFGSLVAEEAHRKGYLRYVHSRIIANVEEIAFYR 310

  Fly   336 GHKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTGSDVGLGTV 400
            ||||||:||::.|..|..||..|.:::||:||:|||.||||||..|:|||::||:|.:....|.:
Mouse   311 GHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYVWSSCGLIMVAIPIITATGFADGDL 375

  Fly   401 PNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGYTFRVAGMMDVFEETALGV 465
            .: ...::.||:||:..|||||||.|.||||||:|||||||..|||||.||..|..||:|...|:
Mouse   376 ED-GPKQAMVSDRTEAFTTARNLLASGADAIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGI 439

  Fly   466 YCKTSVME-SNQS--NGIIEFRNGKPIA-KGRIIYSDDPKNMSISLRAVPVVTPNCDIVVPKLTL 526
            |.:|...| .|.|  .|.:|......:| ||.:|..|.    .|....||::||..::|..:|..
Mouse   440 YKRTVTQEPENHSKRGGNLELPLSDTLAIKGTVIDVDH----GIICENVPIITPAGEVVASRLNF 500

  Fly   527 CIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRPVKDVPCMFYIPQRPYMSIGSLCDQ 591
            .:|.|:||||||||||||||||||||||||:|.|.|:.|.|..    |||||||||||:|||.||
Mouse   501 KVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVLYKPPPQH----MFYIPQRPYMSLGSLRDQ 561

  Fly   592 IIYPDTREDMKRKHITENELRSILKMVSLEHIAQRD-SFDVVRDWKDILSGGEKQRMAIARLFYH 655
            :||||:.:||:.|..|:.:|..||..|.|.||.||: .:|.|.||||:|||||||||.:||:|||
Mouse   562 VIYPDSADDMREKGYTDQDLERILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYH 626

  Fly   656 RPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKYHTHILEFDGLGNWQFRKMN- 719
            :|:||||||||||||||||..|::.|.|.||:||:|||||:|||||||:|:|||.|.|:|.::: 
Mouse   627 KPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWRFEQLDT 691

  Fly   720 ------SDEEQK 725
                  |:|:||
Mouse   692 AIRLTLSEEKQK 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 359/647 (55%)
Abcd2NP_036124.2 Interaction with PEX19. /evidence=ECO:0000250 1..218 105/230 (46%)
3a01203 74..686 CDD:273360 355/627 (57%)
ABC_membrane_2 80..365 CDD:284003 165/285 (58%)
ABCD_peroxisomal_ALDP 479..684 CDD:213190 132/208 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848685
Domainoid 1 1.000 317 1.000 Domainoid score I1264
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55873
Inparanoid 1 1.050 678 1.000 Inparanoid score I717
Isobase 1 0.950 - 0 Normalized mean entropy S1117
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 1 1.000 - - otm43311
orthoMCL 1 0.900 - - OOG6_100236
Panther 1 1.100 - - O PTHR11384
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.720

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