DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and pmp-4

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_001293680.1 Gene:pmp-4 / 24104835 WormBaseID:WBGene00004061 Length:734 Species:Caenorhabditis elegans


Alignment Length:681 Identity:350/681 - (51%)
Similarity:469/681 - (68%) Gaps:47/681 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 STRDSSEEDFKLAEAEKLLVAQQLKKKATNNLVEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLS 133
            |.|.|.:...|: |.|..:.:....||......:|    :|||.|:.|.|||||..|..|.|::.
 Worm    38 SLRKSQKSHHKM-EKEDSVASDGTPKKNKKKAFDP----QFLKQLKELLKIMIPGVFSKEAGIIG 97

  Fly   134 VHTFCLISRTFLSIYVAALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSL 198
            :|:..||.||||:|:||.|||::|:.||.|::.||.|.|:||..:|:|||||||||||.||.|.|
 Worm    98 MHSIILICRTFLTIFVAQLEGSMVQAIVEKNVLQFVLHLVKWILVALPATFVNSMIRFFESYLGL 162

  Fly   199 AFRTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLYSSLTKPCFDL--- 260
            ||||||.:|:|:.||.:|.||.|||||.|::|||..|||||::|:.|||||||.||||..|:   
 Worm   163 AFRTRLTKHAYKQYFSDQTYYAVSNLDTRLQNADQCLTEDITMFSQSVAHLYSHLTKPVLDVALI 227

  Fly   261 --MLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVSPKFGQLVSEEANRYGYLRHIHSR 323
              .||.||:.|.:.:   :......::|..::|||.|||.|||:||.:|:|||.|.|:||::|||
 Worm   228 TFTLIKLAIQRGTGR---STFLPSCMAIMAVSLTAKILRAVSPRFGHMVAEEARRKGHLRYLHSR 289

  Fly   324 IITNAEEIAFYGGHKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLP 388
            ||||:|||||||||:.|.:||..|:|.|..||..||.:::.:||:|||.||||||||||:|::||
 Worm   290 IITNSEEIAFYGGHQAEYKQLDGAFNSLYQQMMLIFKKRIPYIMIEQFLMKYVWSGTGMVMIALP 354

  Fly   389 ILT------GSDVGLGTVPNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGY 447
            ||.      .....|..:|:..     |||||:...||:.||.::|||:||||:||||:..||||
 Worm   355 ILATEYADDEKSTKLEDLPDRG-----VSERTRGYATAKTLLFNSADAVERLMTSYKEVTELAGY 414

  Fly   448 TFRVAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPIAKGRI--IYSDDPKNMSISLRAV 510
            |.||..|..||::...|:|.:.:|     |.|..:.:.|:.....:|  |.:|...: .|.|.:|
 Worm   415 TGRVHEMFQVFDDAKKGIYQRQTV-----SAGAEQGQRGERFDTSKIEGIITDSEAD-EIILNSV 473

  Fly   511 PVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRPVKDVPCMF 575
            |:||||.|:||..:||.|.||:|:|||||||||||||||||.||||:|.|  |:.:|..|  .|:
 Worm   474 PIVTPNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYRG--HLEKPTSD--RMY 534

  Fly   576 YIPQRPYMSIGSLCDQIIYPDTREDMKRKHITENELRSILKMVSLEHIAQRD-SFDVVRDWKDIL 639
            ||||||||::|:|.||:|||||...|:|:.||:.:|.::|::|.||||.:|: .:|...||.|:|
 Worm   535 YIPQRPYMTLGTLRDQVIYPDTTIQMRRQGITDQDLMTMLRIVHLEHIVEREGGWDAQNDWMDVL 599

  Fly   640 SGGEKQRMAIARLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKYHTHI 704
            ||||||||.:||:|||||:||||||||||||||||.|||:..|..||||||:||||:|||:|||:
 Worm   600 SGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSIYQAIKDSGITLLTVTHRPSLWKFHTHL 664

  Fly   705 LEFDGLGNWQFRKMN----------SDEEQK 725
            |::||.|.::...:|          |:|:|:
 Worm   665 LQYDGEGGYKVSSLNEKTIGERMSYSEEKQQ 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 343/653 (53%)
pmp-4NP_001293680.1 3a01203 37..674 CDD:273360 346/658 (53%)
ABC_membrane_2 69..356 CDD:284003 162/293 (55%)
ABCD_peroxisomal_ALDP 468..673 CDD:213190 133/208 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165990
Domainoid 1 1.000 315 1.000 Domainoid score I693
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 653 1.000 Inparanoid score I419
Isobase 1 0.950 - 0 Normalized mean entropy S1117
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 1 1.000 - - oto17808
orthoMCL 1 0.900 - - OOG6_100236
Panther 1 1.100 - - LDO PTHR11384
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.720

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