DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and pmp-3

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_001256607.1 Gene:pmp-3 / 179968 WormBaseID:WBGene00004060 Length:688 Species:Caenorhabditis elegans


Alignment Length:741 Identity:185/741 - (24%)
Similarity:314/741 - (42%) Gaps:158/741 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 VRTQKGKTNGQLSPSTRDSSEEDFKLAEAEKLLVAQQLKKKATNNLVEPGLNKEFLKHLQMLAKI 119
            |||:||:.|.        |::...|:|..                    .|:..|.:....|.||
 Worm    12 VRTEKGRKNA--------SAQNPVKMARL--------------------ALDFLFFRRFWRLLKI 48

  Fly   120 MIPQAFCYETGLLSVHTFCLISRTFLS---IYVAALEGALVKFIV---RKDIKQFALVLLKWFGI 178
            :.|   |:...:.:.....|:..|.|.   .|:..::.:|  |.|   .||...|.::..:...|
 Worm    49 LFP---CHRRSITAWLAGALLIATALDQVMTYLVGIQPSL--FYVALGNKDADTFKILCARGAAI 108

  Fly   179 AIPATFVNSMIRFLESKLSLAFRTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDIS--- 240
            .:...|..::.::|.:.|::..|.......:|||||.|.::::|:....::|.|.|||:||.   
 Worm   109 ILGKAFTLAVFKYLTNMLAIKSRQVCNLTMHRLYFKRQAFFKLSSSGDMLDNPDQRLTQDIEKAT 173

  Fly   241 -VFANSVAHLYSSLTKPCFDLMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVSPKFG 304
             :.:|.:  |....|.|    .:||.....:   .:::...|||.......:...|.:::.....
 Worm   174 RILSNDL--LAPIATAP----FIIGYYTWLT---YESSGWIGPAAIYTYFCIQTIINKMILSPIV 229

  Fly   305 QLVSEEANRYGYLRHIHSRIITNAEEIAFYGG-------------HKVEMQQLRQAYNRLVNQMT 356
            |.|||:....|..|..|..:.:|.|.||||..             :.:|.|:....:..::|.:|
 Worm   230 QKVSEQEKMEGDFRQRHMEVRSNVEAIAFYRAGVLENIMTNQKLKNLIETQKSLTEWRMVLNSIT 294

  Fly   357 TIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTG---SDVGLGTVPNTAISESRVSERTQYLT 418
            .:|:              |.......:::.:|:...   .||....: |..:|.:...    || 
 Worm   295 NVFD--------------YFGGILSYLIIGVPVFITHLYDDVSPAEL-NGIVSRNAFF----YL- 339

  Fly   419 TARNLLISAADAIERLMSSYKEIVSLAGYTFRVAGMMDVFEE-TALGVYC-KTSVMESNQSNGII 481
                .||.:...:.:|...:.|   |||.|.||   |::.|| ..|...| :|....|...:.::
 Worm   340 ----YLIYSFSTVLKLTGDFGE---LAGVTHRV---MELHEELNRLHSDCLETDRPPSTVPSSVV 394

  Fly   482 ------------------------------EFRNGKPIAKGRIIYSDD--PKNMSISLRAVPVVT 514
                                          |....:.:..|:....||  ...::|::.:..:..
 Worm   395 VIASDEDDKSASRHMQEIHGKQMSLERDEQEEEEAQYLLGGKTGQEDDWPDDGVAITVDSATLSP 459

  Fly   515 PN--CDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGEL--HIPRPVKDVPCMF 575
            ||  ..::|..|:|.|..|..|||||.:|||||||.|:.:|||...:|::  |..|...:   :|
 Worm   460 PNDHSHLIVQLLSLQIIQGQTLLITGDSGCGKSSLLRMFAGLWHCSSGKMDCHWRRLTSN---LF 521

  Fly   576 YIPQRPYMSIG--SLCDQIIYP----DTREDMKRKHITENELRSILKMVSLEHIAQR----DSFD 630
            ::.|:||...|  :|..||:||    ...:|:.|  ||:     ||:.|.:||:.:|    |: .
 Worm   522 FLAQKPYFPSGNTTLRQQIVYPVKALQVDKDVAR--ITQ-----ILEWVKMEHLVERCGGLDT-P 578

  Fly   631 VVRDWKDILSGGEKQRMAIARLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRP 695
            |..||...||.||.||:::||:||.:||...|||.|||:..::|.:||...:...||.::|.||.
 Worm   579 VEWDWMKTLSPGELQRLSLARVFYTKPRIVFLDESTSAIGFELEMAIYRKLQEEKITFVSIGHRY 643

  Fly   696 TLWKYHTHILEFDG-LGNWQFRKMNS 720
            :|.::|...|...| .|.|....:::
 Worm   644 SLKQFHDMELRVKGRSGEWSLHDIDT 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 178/714 (25%)
pmp-3NP_001256607.1 ABC_membrane_2 34..314 CDD:284003 66/307 (21%)
YddA 37..655 CDD:226646 172/672 (26%)
ABCD_peroxisomal_ALDP 450..662 CDD:213190 82/222 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100236
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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