DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and pmp-5

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_504689.1 Gene:pmp-5 / 179056 WormBaseID:WBGene00004062 Length:598 Species:Caenorhabditis elegans


Alignment Length:630 Identity:157/630 - (24%)
Similarity:263/630 - (41%) Gaps:120/630 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 YETGLLSVHTFCLISRTFLSIYVAALEGALVKFIVRKDIKQFALVLLKW--FGIA----IPATFV 185
            |:||::..           ..|||.:|         ||..:|      |  |.||    :....:
 Worm    54 YKTGVIPG-----------KFYVALIE---------KDEPKF------WHIFWIASLCYVGLCLL 92

  Fly   186 NSMIRFLESKLSLAFRTRLVRHSYRLYFKNQNYYRVSNLDGR-IENADHRLTEDISVFANSVAHL 249
            .:::.|....|.:..|..||:..::||:||..||:::.:|.. |:|.|.|:|:|    |:.:..|
 Worm    93 MALMNFFSWCLYIQQRKNLVQCLHKLYYKNNFYYQLNGVDDHGIDNPDQRITQD----ADKLTKL 153

  Fly   250 YSSLTKPC-----FDLMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVSPKFGQLVSE 309
            ..:...|.     |.:...|:.:..::......:|....| |||| :...::..::|...::...
 Worm   154 LGTSIIPTVLLSPFIISYYGVRVWETAGGWGFGMIVAYFL-IGVI-INRILIGPITPWAARVEKA 216

  Fly   310 EANRYGYLRHIHSRIITNAEEIAFYGG----HKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQ 370
            |    |..|:.|..:..||||.|||..    |..........:.||:|.|...|..:.:     |
 Worm   217 E----GDFRYKHVSVRVNAEESAFYKSAEFEHVFSDLSFDVLFKRLLNFMCWRFPSQFF-----Q 272

  Fly   371 FFMKYVWSGTGMIMVSLPI--------LTGSDVGLGTVPNTAISESRVSERTQYLTTARNLLISA 427
            .|..|.......|:...|:        ||.:::. |.:.|.|.                 ..|..
 Worm   273 SFFDYYGGCMSYILQLFPLFVFHMYDNLTPAELS-GQISNNAF-----------------YFIYL 319

  Fly   428 ADAIERLMSSYKEIVSLAGYTFRVAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPI--- 489
            .:...||......|..|.||..||:..:|..:....|:        .|::     ||....:   
 Worm   320 INCFTRLTDLAMNIAELGGYIMRVSEFVDTGKLHQSGI--------KNEA-----FRRNSELPEK 371

  Fly   490 AKGRIIYSDDPKNMSISLRAVPVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGL 554
            |.|     ||....:..|...|....|..| :..||..:.....|||||.:|.||:||.|:::.:
 Worm   372 ASG-----DDNLIETEHLSFGPPTNSNIRI-IENLTFHLPRNKTLLITGDSGIGKTSLMRVIADM 430

  Fly   555 WPIYAGELHIPRPVKDVPCMFYIPQRPYMSIG--SLCDQIIYPDTREDMKRKHITENELRSILKM 617
            || :.|.|.......|.   :::||:||..:|  ||..|:::|  .|:.:.|...:.|:..||..
 Worm   431 WP-HQGILKKHFKKTDA---YFLPQKPYFPVGRLSLKQQLVFP--AEENEEKSGNDEEIVRILHE 489

  Fly   618 VSLEHIAQ-----RDSFDVVRDWKDILSGGEKQRMAIARLFYHRPRYALLDECTSAVSIDVESSI 677
            :.|.|:..     .||.|.  :|::.||.||:||:..||:....|..|.|||.|..|...:|:::
 Worm   490 LKLGHLLPIVGNIHDSVDF--EWQETLSPGEQQRLCFARMILAEPTVAFLDESTCNVDEGMENAM 552

  Fly   678 YEIAKGMGITLLTITHRPTLWKYHTHILEFDGLGNWQFRKMNSDE 722
            ||:.:...||.:::.||.:|..:|...|......::.|.::::.:
 Worm   553 YEMLRKHSITYISVGHRKSLRSHHDFELRIPSSSSFLFHEIHNQK 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 156/621 (25%)
pmp-5NP_504689.1 YddA 33..582 CDD:226646 156/613 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100236
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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