DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD and abcd2

DIOPT Version :9

Sequence 1:NP_001245409.1 Gene:ABCD / 43772 FlyBaseID:FBgn0039890 Length:730 Species:Drosophila melanogaster
Sequence 2:XP_004913059.1 Gene:abcd2 / 101730598 XenbaseID:XB-GENE-6467268 Length:730 Species:Xenopus tropicalis


Alignment Length:681 Identity:354/681 - (51%)
Similarity:465/681 - (68%) Gaps:57/681 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RDSSEEDFKLAEAEKLLVAQQLKKKATNNLVEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVH 135
            ::|....:|.|..:        ..|.:.....|.:|.||.:.|..|.:|:.|:....|.||||||
 Frog    46 KESDSSPYKQAPCD--------PSKGSPKPSSPAVNAEFYRQLLELRRILFPKLLSKELGLLSVH 102

  Fly   136 TFCLISRTFLSIYVAALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAF 200
            :..||||||||:|||.|:|.:||.||.|..:.|.:.|:||..||||||||||.||:||.||:||.
 Frog   103 SLALISRTFLSVYVAGLDGKIVKSIVEKKPRNFLMQLMKWLLIAIPATFVNSAIRYLEGKLALAL 167

  Fly   201 RTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLYSSLTKPCFDLMLIGL 265
            |||||.|:||.||.:|.||::.|:|.|:.|.|..|||||.:|:.|||||||:||||..|::|...
 Frog   168 RTRLVDHAYRTYFADQTYYKIINMDSRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVVLTSY 232

  Fly   266 ALMRSSKKMKANIITGPALSIG-VIALTAHILRIVSPKFGQLVSEEANRYGYLRHIHSRIITNAE 329
            .|:::::...||.: ||.|..| |:..||.:|:..|||||:||:|||:|.||||::|||||.|.|
 Frog   233 TLIQTARSRGANPL-GPTLLAGLVVYATAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVE 296

  Fly   330 EIAFYGGHKVEMQQLRQAYNRLVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTG-- 392
            |||||.||||||.:|:::|..|.:|:..|.:::||::|:|||.|||||||:|::||::||:|.  
 Frog   297 EIAFYRGHKVEMTKLQKSYMALADQINLILSKRLWYVMIEQFLMKYVWSGSGLVMVAVPIITATG 361

  Fly   393 ---SDVGLGTVPNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGYTFRVAGM 454
               ||:..|.      .::.|||||:..|||||||.|.||||||:||||||:..|||||.||..|
 Frog   362 FADSDLEDGQ------KQAMVSERTEAFTTARNLLASGADAIERIMSSYKEVTELAGYTARVYNM 420

  Fly   455 MDVFEETALGVYCKTSVMESNQSN------------GIIEFRNGKPIAKGRIIYSDDPKNMSISL 507
            ..||.|...|:| |.|:::..::|            |.:|.       ||:::..|.    .|..
 Frog   421 FSVFNEVKKGIY-KRSLIQETKNNKKHKEKTELHIDGPLEI-------KGKVVDVDH----GIIC 473

  Fly   508 RAVPVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRPVKDVP 572
            ..||::|||.|:||.||.:.:|.|:|||||||||||||||||||.||||:|.|.|:.|.|.|   
 Frog   474 EDVPIITPNGDVVVSKLNIKVEEGMHLLITGPNGCGKSSLFRILGGLWPVYEGVLYKPPPQK--- 535

  Fly   573 CMFYIPQRPYMSIGSLCDQIIYPDTREDMKRKHITENELRSILKMVSLEHIAQRD-SFDVVRDWK 636
             |||||||||||||:|.||:||||..|||..|...:.:|..||.:|.|.||.||: .:|...|||
 Frog   536 -MFYIPQRPYMSIGTLRDQVIYPDLLEDMHEKGYQDQDLEHILDIVHLNHIVQREGGWDAFTDWK 599

  Fly   637 DILSGGEKQRMAIARLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKYH 701
            |:|||||||||.:||:|||||:||||||||||||||||..|::.||..||:||:|||||:|||||
 Frog   600 DVLSGGEKQRMGMARMFYHRPQYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH 664

  Fly   702 THILEFDGLGNWQFRKMN-------SDEEQK 725
            ||:|:|||.|.|:|.:::       |:|:|:
 Frog   665 THLLQFDGEGGWRFEQLDTATRLSLSEEKQR 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCDNP_001245409.1 3a01203 75..715 CDD:273360 349/658 (53%)
abcd2XP_004913059.1 3a01203 26..678 CDD:273360 350/662 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 315 1.000 Domainoid score I1275
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55873
Inparanoid 1 1.050 673 1.000 Inparanoid score I728
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 1 1.000 - - otm48460
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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