DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl4 and ARF3

DIOPT Version :9

Sequence 1:NP_001245408.1 Gene:Arl4 / 43771 FlyBaseID:FBgn0039889 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_014737.1 Gene:ARF3 / 854261 SGDID:S000005620 Length:183 Species:Saccharomyces cerevisiae


Alignment Length:169 Identity:71/169 - (42%)
Similarity:96/169 - (56%) Gaps:21/169 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPL 90
            :.::|||||.|||||.||:||.::...:.||:|||.|.|     ..|.|.|.:||||||::||||
Yeast    18 MKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETV-----TYKNVKFNMWDVGGQQRLRPL 77

  Fly    91 WRSYTRCTDGILFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNA------CGA 149
            ||.|...|..::|||||....||||||.||.......:.:.|.:|:.||||||.:|      ...
Yeast    78 WRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDF 142

  Fly   150 MELEK--------LLGLNELYNP--VPNISMPSSSDSSP 178
            :||||        ::|.|.|...  |..:|..|::.:.|
Yeast   143 LELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNNTNVP 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl4NP_001245408.1 P-loop_NTPase 24..311 CDD:304359 71/169 (42%)
ARF3NP_014737.1 Arf6 9..177 CDD:206716 70/163 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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