DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl4 and Trim23

DIOPT Version :10

Sequence 1:NP_001245408.1 Gene:Arl4 / 43771 FlyBaseID:FBgn0039889 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001348467.1 Gene:Trim23 / 81003 MGIID:1933161 Length:574 Species:Mus musculus


Alignment Length:136 Identity:60/136 - (44%)
Similarity:86/136 - (63%) Gaps:5/136 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPL 90
            :.||.||||.|||||.|::||.|:::..:||||||.|.|:     .|.:.|.:|||||:.|||||
Mouse   405 IRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVE-----YKNLKFTIWDVGGKHKLRPL 464

  Fly    91 WRSYTRCTDGILFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAMELEKL 155
            |:.|...|..::||:||...:|:.||..||.:.....:.:...:||.|||||:..|....|:.:|
Mouse   465 WKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITEL 529

  Fly   156 LGLNEL 161
            |.|::|
Mouse   530 LSLHKL 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl4NP_001245408.1 P-loop containing Nucleoside Triphosphate Hydrolases 24..311 CDD:476819 60/136 (44%)
Trim23NP_001348467.1 mRING-HC-C3HC3D_TRIM23_C-IX 28..77 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 123..172 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 174..223 CDD:380832
CC_brat-like 226..370 CDD:475168
ARF-like 390..574 60/136 (44%)
ARD1 406..574 CDD:206723 60/135 (44%)
Blue background indicates that the domain is not in the aligned region.

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