DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl4 and arf3a

DIOPT Version :9

Sequence 1:NP_001245408.1 Gene:Arl4 / 43771 FlyBaseID:FBgn0039889 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001003441.1 Gene:arf3a / 445047 ZFINID:ZDB-GENE-040801-176 Length:181 Species:Danio rerio


Alignment Length:292 Identity:93/292 - (31%)
Similarity:126/292 - (43%) Gaps:116/292 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GNILDALPSQVATLHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVQCTLGKAKGVHFL 77
            ||:|.:|..: ..:.::|:|||:|||||.||:||..:.:.|:||||||.|.|:     .|.:.|.
Zfish     6 GNLLKSLIGK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFT 64

  Fly    78 VWDVGGQEKLRPLWRSYTRCTDGILFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQD 142
            |||||||:|:|||||.|.:.|.|::||:||.|.||:.||:.||||.....:.:...:||.|||||
Zfish    65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLIFANKQD 129

  Fly   143 LPNACGAMELEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKKESHLHS 207
            ||||..|.|:...|||                                                 
Zfish   130 LPNAMNAAEITDKLGL------------------------------------------------- 145

  Fly   208 SMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQDVKNGFHNKKMNRSSSNSVQF 272
                                                                        :|::.
Zfish   146 ------------------------------------------------------------HSLRH 150

  Fly   273 RGWYIQPTCAITGEGLQEGLDALYDMILKRRK 304
            |.||||.|||.:|:||.||||.|.:. ||.:|
Zfish   151 RNWYIQATCATSGDGLYEGLDWLANQ-LKNKK 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl4NP_001245408.1 P-loop_NTPase 24..311 CDD:304359 89/281 (32%)
arf3aNP_001003441.1 P-loop_NTPase 5..179 CDD:422963 91/288 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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