DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl4 and trim23

DIOPT Version :10

Sequence 1:NP_001245408.1 Gene:Arl4 / 43771 FlyBaseID:FBgn0039889 Length:313 Species:Drosophila melanogaster
Sequence 2:XP_002934252.2 Gene:trim23 / 100490191 XenbaseID:XB-GENE-984755 Length:577 Species:Xenopus tropicalis


Alignment Length:136 Identity:62/136 - (45%)
Similarity:86/136 - (63%) Gaps:5/136 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPL 90
            :.||.||||.|||||.|::||.|:::..:||||||.|.|:     .|.:.|.:|||||:.|||||
 Frog   408 IRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVE-----YKNLKFTIWDVGGKHKLRPL 467

  Fly    91 WRSYTRCTDGILFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAMELEKL 155
            |:.|...|..::|||||...||:.||..||.:.....:.:...:||.|||||:..|....|:.:|
 Frog   468 WKHYYLNTQAVVFVIDSSHRERVTEAHSELSKLLTEKELRDALLLIFANKQDVTGALSVEEMTEL 532

  Fly   156 LGLNEL 161
            |.|::|
 Frog   533 LSLHKL 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl4NP_001245408.1 P-loop containing Nucleoside Triphosphate Hydrolases 24..311 CDD:476819 62/136 (46%)
trim23XP_002934252.2 mRING-HC-C3HC3D_TRIM23_C-IX 31..80 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 126..175 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 177..226 CDD:380832
CC_brat-like 229..373 CDD:475168
ARD1 409..577 CDD:206723 62/135 (46%)
Blue background indicates that the domain is not in the aligned region.

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