DRSC/TRiP Functional Genomics Resources

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Protein Alignment pan and lef1

DIOPT Version :9

Sequence 1:NP_726528.2 Gene:pan / 43769 FlyBaseID:FBgn0085432 Length:1192 Species:Drosophila melanogaster
Sequence 2:NP_571501.1 Gene:lef1 / 30701 ZFINID:ZDB-GENE-990714-26 Length:365 Species:Danio rerio


Alignment Length:461 Identity:141/461 - (30%)
Similarity:196/461 - (42%) Gaps:145/461 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 SNESILPQKTNA------VHSKIPDVESESDFFLTSAKPKTLVEIEDIIL---QLASSVNMHQSS 433
            :.:.::|.|...      :.::|...|.|.|          |.||:..::   :::.:.|.|.::
Zfish    17 ATDEMIPFKDEGDPHKEQIFAEISHSEEEGD----------LAEIKSSLVNETEISPNSNSHDAA 71

  Fly   434 SAS--TP---HESYSDSVKSDCEESNSAPTCIWHSTRQTFRHKKDVEPCSTAAEIILEYASLSSS 493
            ..|  ||   ||.:.|                         |..|.           :...|.|.
Zfish    72 RQSQITPDSYHEKHRD-------------------------HPDDG-----------KLQDLYSK 100

  Fly   494 SNIETSR----LLTSASNLTDVTENY--NVTTQLPIVFNYNRESSAESIVTDPLLVPEFSTAPST 552
            .:...|.    ::|:.:|     |.|  |.:...||....|:.         |::.|..:..|.|
Zfish   101 GHPYPSYPGYIMMTNMNN-----EPYMNNGSLSPPIPRTSNKV---------PVVQPSHAVHPLT 151

  Fly   553 P-STGSNSGCSTGMVSGIFGLSQNRRKQRLARHIETLTTNSFKSNAIRGNVDNEITNQLKTSPSI 616
            | .|.|:...:.|..||......|.::..:.||                :...:|.|....||. 
Zfish   152 PLITYSDEHFAPGPHSGHHPQDVNPKQAGMPRH----------------HPGPDIPNFYPLSPG- 199

  Fly   617 RALPTENVSHLITKTLSSANASLTAQELSITNLFKERLCALQGNAGSMKTEI------FPMIDAP 675
                  .|..: |..|               ..|...:  :.|..|...|.|      .|.:...
Zfish   200 ------GVGQM-TPPL---------------GWFSHHM--VPGPPGPHATGIPHPAIVNPQVKQE 240

  Fly   676 YDLSIGSKTKHMNLEAKHTSNAQSNESKETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKE 740
            :|      |..|:::.:|      .:.||  .:.|:|||||||||||||||||||.|||||||||
Zfish   241 HD------TDLMHMKPQH------EQRKE--QEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKE 291

  Fly   741 SAAINQILGRRWHELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRSTTDS 805
            |||||||||||||.||||||:||||.||:||||||:||||||||||||   ||||||:::....:
Zfish   292 SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREKIQEPA 353

  Fly   806 GGNNMK 811
            .|...:
Zfish   354 SGTGQR 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
panNP_726528.2 SOX-TCF_HMG-box 713..784 CDD:238684 64/70 (91%)
lef1NP_571501.1 CTNNB1_binding 1..210 CDD:285538 50/291 (17%)
SOX-TCF_HMG-box 264..335 CDD:238684 64/70 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I4951
eggNOG 1 0.900 - - E1_KOG3248
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000839
OrthoInspector 1 1.000 - - otm25294
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10373
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2732
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.990

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