DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pan and Lef1

DIOPT Version :9

Sequence 1:NP_726528.2 Gene:pan / 43769 FlyBaseID:FBgn0085432 Length:1192 Species:Drosophila melanogaster
Sequence 2:XP_006233364.1 Gene:Lef1 / 161452 RGDID:620241 Length:412 Species:Rattus norvegicus


Alignment Length:446 Identity:147/446 - (32%)
Similarity:201/446 - (45%) Gaps:89/446 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   384 PQKTNAVHSKIPDVESESDFFLTSAKPKTLVEIEDIILQLASSVNMHQSSSASTPHESYSDSVKS 448
            ||| ..:.::|...|.|.|  |...| .:||...:||........:.|:.|:..|   |.|..:.
  Rat    30 PQK-EKIFAEISHPEEEGD--LADIK-SSLVNESEIIPASNGHEVVRQTQSSQEP---YHDKARE 87

  Fly   449 DCEES--------NSAPTCIWHSTRQTFRHKKDVEPCSTAAEIILEYASLSSSSNIETSRLLTSA 505
            ..::.        |..|:                            |:|.|       ..::...
  Rat    88 HPDDGKHPDGGLYNKGPS----------------------------YSSYS-------GYIMMPN 117

  Fly   506 SNLTDVTENYNVTTQLPIVFNYNRESSAESIVTDPLLVPEFSTAPSTP-STGSNSGCSTGMVSGI 569
            .|......|.:::..:|...|           ..|::.|..:..|.|| .|.|:...|.|.....
  Rat   118 MNSDPYMSNGSLSPPIPRTSN-----------KVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSH 171

  Fly   570 FGLSQNRRKQRLARHIETLTTNSFKSNAIRGNVDNEITNQLKTSPSIRALPTENVSHLITKTLSS 634
            .. |:...||.::||.......:|...:..|      ..|:......:..|.    :.||.....
  Rat   172 IP-SEVNPKQGMSRHPPAPEMPTFYPLSPGG------VGQITPPLGWQGQPV----YPITGGFRQ 225

  Fly   635 ANASLTAQELSITNLFKERLCALQGNAGSMKTEI-FPMIDAPYDLSIGSKTKHMNLEAKHTSNAQ 698
            |..|..:.:.|::. |...:  :.|..|...|.| .|.|..|   .:..:..|.:.:..|. ..|
  Rat   226 AYPSSLSGDTSMSR-FSHHM--IPGPPGPHTTGIPHPAIVTP---QVKQEHPHTDSDLMHV-KPQ 283

  Fly   699 SNESKETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHELSREEQSKY 763
            ..:.||  .:.|:|||||||||||||||||||.||||||||||||||||||||||.||||||:||
  Rat   284 HEQRKE--QEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKY 346

  Fly   764 YEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDR-STTDSGG--NNMKKCRAR 816
            ||.||:||||||:||||||||||||   ||||||::: ..:.|||  |:...|:|:
  Rat   347 YELARKERQLHMQLYPGWSARDNYG---KKKKRKREKLQESTSGGKRNSFPTCKAK 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
panNP_726528.2 SOX-TCF_HMG-box 713..784 CDD:238684 64/70 (91%)
Lef1XP_006233364.1 CTNNB1_binding 1..211 CDD:285538 44/240 (18%)
SOX-TCF_HMG-box 296..367 CDD:238684 64/70 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I4867
eggNOG 1 0.900 - - E1_KOG3248
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000839
OrthoInspector 1 1.000 - - otm46416
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10373
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.870

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