DRSC/TRiP Functional Genomics Resources

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Protein Alignment pan and lef1

DIOPT Version :9

Sequence 1:NP_726528.2 Gene:pan / 43769 FlyBaseID:FBgn0085432 Length:1192 Species:Drosophila melanogaster
Sequence 2:NP_001230763.1 Gene:lef1 / 100493178 XenbaseID:XB-GENE-485517 Length:372 Species:Xenopus tropicalis


Alignment Length:436 Identity:131/436 - (30%)
Similarity:185/436 - (42%) Gaps:111/436 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   384 PQKTNAVHSKIPDVESESDFFLTSAKPKTLVEIEDIILQLASSVNMHQSSSASTPHESYSDSVKS 448
            ||| ..::::|.:.|.|.|  |...|...:.|.|     :..|.|.|:.|...  .:||.:..:.
 Frog    34 PQK-EKIYAEISNPEEEGD--LADIKSSLVNETE-----IIPSSNSHEISRRR--QDSYHEKSRE 88

  Fly   449 DCEESNSAPTCIWHSTRQTFRHKKDVEPCSTAAEIILEYASLSSSSNIETSRLLTSASNLTDVTE 513
            ..|::...|....:|...::                ..|.|.....|:.....:::.|....:..
 Frog    89 HPEDAGKHPDGGLYSKGPSY----------------TGYPSYIMMPNMNNEPYMSNGSLSPPIPR 137

  Fly   514 NYNVTTQLPIVFNYNRESSAESIVTDPLLVPEFSTAPSTPSTGSNSGCSTGMVSGIFGLSQNRRK 578
            ..|..                     |::.|..:..|.||                         
 Frog   138 TSNKV---------------------PVVQPSHAIHPLTP------------------------- 156

  Fly   579 QRLARHIETLTTNSFKSNAIRGNVDNEITNQ--LKTSPSIRALPTENVSHLITKTLSSANASLTA 641
                  :.|.:...|...|...::.:::.::  :...|....|||       ...||..:.....
 Frog   157 ------LITYSDEHFAPGAHPSHIPSDVNSKQGMHRHPQAPDLPT-------FYPLSPGSVGQMT 208

  Fly   642 QELSITNLFKERLCALQGNAGSMKTEIFPMIDAPYDLSIGSKTKHMNLEAKHTSN----AQSNES 702
            ..|   ..:...:  :.|..|...|.|      |:...:..:.|.   |..|..|    .:.:..
 Frog   209 PPL---GWYPHHM--VSGPPGPHATGI------PHPAIVNPQVKQ---EHPHNDNDLMHMKPHHE 259

  Fly   703 KETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHELSREEQSKYYEKA 767
            :....:.|:|||||||||||||||||||.||||||||||||||||||||||.||||||:||||.|
 Frog   260 QRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELA 324

  Fly   768 RQERQLHMELYPGWSARDNYGYVSKKKKRKKDR---STTDSGGNNM 810
            |:||||||:||||||||||||   ||||||:::   ||:.:|...|
 Frog   325 RKERQLHMQLYPGWSARDNYG---KKKKRKREKLQESTSGAGPPRM 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
panNP_726528.2 SOX-TCF_HMG-box 713..784 CDD:238684 64/70 (91%)
lef1NP_001230763.1 CTNNB1_binding 1..213 CDD:285538 40/266 (15%)
SOX-TCF_HMG-box 270..341 CDD:238684 64/70 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I4959
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000839
OrthoInspector 1 1.000 - - otm49493
Panther 1 1.100 - - O PTHR10373
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.100

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