DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS3A and AT4G34670

DIOPT Version :9

Sequence 1:NP_001245404.1 Gene:RpS3A / 43768 FlyBaseID:FBgn0017545 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_195193.1 Gene:AT4G34670 / 829619 AraportID:AT4G34670 Length:262 Species:Arabidopsis thaliana


Alignment Length:266 Identity:159/266 - (59%)
Similarity:196/266 - (73%) Gaps:11/266 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGR 65
            |||||||.:|| |:||||||.|||||:|||||||||..|..|.:|||||:||||.:|||:.||.|
plant     1 MAVGKNKRISK-GRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHR 64

  Fly    66 VFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEA 130
            ||||||||||.|.|  .::||.||.|||||.||||..|.|||.||||.||:||||||||||.|:.
plant    65 VFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDV 127

  Fly   131 KTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDS 195
            ||.|||.||:|||.||.:.....::|||||.||:|:||.:|::|:..|.|..|||:||.|...::
plant   128 KTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEA 192

  Fly   196 IAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGY 260
            |.::|||:.|.||||.:|:|||||:||.|:||:.||:|:|||...:.|       |..:|||.. 
plant   193 IGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDV-------GVKVDRPAD- 249

  Fly   261 EPPVQE 266
            |..|:|
plant   250 ETMVEE 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS3ANP_001245404.1 Ribosomal_S3Ae 21..224 CDD:395802 126/202 (62%)
AT4G34670NP_195193.1 Ribosomal_S3Ae 20..221 CDD:395802 126/202 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 265 1.000 Domainoid score I463
eggNOG 1 0.900 - - E1_COG1890
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68112
Inparanoid 1 1.050 305 1.000 Inparanoid score I760
OMA 1 1.010 - - QHG62242
OrthoDB 1 1.010 - - D1207239at2759
OrthoFinder 1 1.000 - - FOG0002587
OrthoInspector 1 1.000 - - otm2631
orthoMCL 1 0.900 - - OOG6_100723
Panther 1 1.100 - - O PTHR11830
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1698
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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