DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS3A and AT3G04840

DIOPT Version :9

Sequence 1:NP_001245404.1 Gene:RpS3A / 43768 FlyBaseID:FBgn0017545 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_187135.1 Gene:AT3G04840 / 819644 AraportID:AT3G04840 Length:262 Species:Arabidopsis thaliana


Alignment Length:266 Identity:159/266 - (59%)
Similarity:196/266 - (73%) Gaps:11/266 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGR 65
            |||||||.:|| |:||||||.|||||:|||||||||::|..|.:|||||:||||.:|||:.||.|
plant     1 MAVGKNKRISK-GRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHR 64

  Fly    66 VFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEA 130
            ||||||||||.|.|  .::||.||.|||||.|||||.|.|||.||||.||:||||||||||.|:.
plant    65 VFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDV 127

  Fly   131 KTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDS 195
            ||.|.|.||:|||.||.:.....::|||||.||:|:||.:|.||:..|.|..|||.||.|...::
plant   128 KTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEA 192

  Fly   196 IAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGY 260
            |.::|||:.|.||||.:|:|||||:||.|:||:.||:::|||...:.|       |..:|||.. 
plant   193 IGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDV-------GVKVDRPAD- 249

  Fly   261 EPPVQE 266
            |..|:|
plant   250 EMAVEE 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS3ANP_001245404.1 Ribosomal_S3Ae 21..224 CDD:395802 127/202 (63%)
AT3G04840NP_187135.1 Ribosomal_S3Ae 20..221 CDD:395802 127/202 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 265 1.000 Domainoid score I463
eggNOG 1 0.900 - - E1_COG1890
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68112
Inparanoid 1 1.050 305 1.000 Inparanoid score I760
OMA 1 1.010 - - QHG62242
OrthoDB 1 1.010 - - D1207239at2759
OrthoFinder 1 1.000 - - FOG0002587
OrthoInspector 1 1.000 - - otm2631
orthoMCL 1 0.900 - - OOG6_100723
Panther 1 1.100 - - O PTHR11830
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1698
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.