DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ci and Glis3

DIOPT Version :9

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_038957323.1 Gene:Glis3 / 680671 RGDID:1565505 Length:929 Species:Rattus norvegicus


Alignment Length:1048 Identity:270/1048 - (25%)
Similarity:372/1048 - (35%) Gaps:382/1048 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ALPTYFPLAYSELQFLAS-------RRAAAVAAAATVLP-----GSP------------------ 39
            |.|.:.|......|.||:       .:|..:||:.|:.|     |.|                  
  Rat    76 ASPIHLPALSPRRQLLANGKPQFQVTQAGVMAASHTLKPKQQEFGDPFSPNPEKGALGFGPQCKS 140

  Fly    40 -----CINQHHPTDVSSSVTVPSIIPTGGTSDSIKTS---IQPQICNENTLLGNAGHQHNHQPQH 96
                 |.|.   ...||.:.|..:.|....:..:.|:   |.|.:                 |:.
  Rat   141 IGKGSCNNL---VVTSSPMMVQRLGPISPPASQVSTACKQISPSL-----------------PRA 185

  Fly    97 VHNINVTGQPHDFHPAYRIPGYMEQLYSLQRTNSASSFHDPYVNCASAFHLAGLGLGSADFLGSR 161
            |:.:|:...|.|..........:....||..:.||.|....:               |..:.|..
  Rat   186 VNAVNLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEW---------------SQSYRGFP 235

  Fly   162 GLSS---------LGELHNAAVAAAAAGSLASTD---FHFSVDGNRR-LGSPRPPGGSIRASISR 213
            .|||         ||:|.:.......:|:..|..   :.|.::.:.. ..|||.......::.|:
  Rat   236 SLSSNHSSQNGMDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENSHSPYPSPRHSATRPHSTRSK 300

  Fly   214 KRALSSSPYSD--SFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISATALNPMSHVHSTRLQ 276
            |||||.||.||  ..|.|::||.||.||...:||||.|.|           .::|.|.|:     
  Rat   301 KRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGSRASPA-----------NMSPQSEVY----- 349

  Fly   277 QIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVS 341
               .|.|    |:.....||..|.|....|.:.||.             .|    |.|...:|  
  Rat   350 ---GHFL----GVRGSCIPQSCAVSSGQKGVLVTSG-------------GH----TLPGYGED-- 388

  Fly   342 QVPAAAFSLKNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIP 406
                     ..|:..|.::.....:   ||.|.:..|.|                      .|:|
  Rat   389 ---------GTLEYERMQQLEHGGL---QPGSGNSMVLQ----------------------PGLP 419

  Fly   407 G------DVKVNSRLDEYINCGSISIPSNEYDCANADTTDIK----------------------- 442
            |      ::....||:|:        |::..|..:|....:.                       
  Rat   420 GQDGQTANMLKTERLEEF--------PASALDLPSAPPLPLPPPQGPPPPYHAHPHLHHPELLPH 476

  Fly   443 -----------DEPGDFIETN----CHWRSCRIEFITQDELVKHINNDHIQTNK-KAFVCRWEDC 491
                       :|.|:..::.    |.|..|...:..|:|||:||...||...| :.|.|.|..|
  Rat   477 TQSLPLAQAGLEEDGELEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTGC 541

  Fly   492 TRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSK 556
            .|..|||.|:|.|::|||.|:||||:|||||||.||:|||||||.|||||||||||.|::|||.|
  Rat   542 PRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQHPGCQK 606

  Fly   557 AFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKK-------HK 614
            ||||:||||||| |||.:.|||.|:.||||||||||||||||||.....|..|.||       |.
  Rat   607 AFSNSSDRAKHQ-RTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHP 670

  Fly   615 GL--------PLNDANSR-----------------------LQQNNS----------------RH 632
            .|        ||..|.|.                       ...|:|                .|
  Rat   671 DLLTDCLAVQPLQPATSPRDAADRTVGHSPGPGPELYSAPIFASNHSTRSGTAAGAVPPPHPVSH 735

  Fly   633 NLQEHNIDSSPCSEDSHLGKMLGTSSPSIKSESDISSSNHHLVNG-VRASDSLL----------- 685
            ....||:..||.:..|||..:....: ..:..:..:.|.||:..| |.|..|||           
  Rat   736 PSPGHNVQGSPHNPSSHLPPLTAVDA-GTERFAPPTPSPHHISPGRVPAPQSLLQRAQAPHTQQP 799

  Fly   686 ------TYSPDDLAENLNLDDGWNCDDDVDVADLPIVLRAMVNIGNGNASASTIGGSVLARQRFR 744
                  .|.|:.                                   |:|..:.|..|   ..|.
  Rat   800 PGSLLKPYQPET-----------------------------------NSSFQSNGIHV---HGFY 826

  Fly   745 GRLQTKGINSSTIMLC--NIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIGGYTED 807
            |:|||         .|  |.|:|.|:...|      :...|.|..: :..:|    |::|....|
  Rat   827 GQLQT---------FCPPNYPDSQRSVPSS------SSCSMVPSFE-DCLVP----TSMGQAGFD 871

  Fly   808 PLQNQTSFRNTVSNKQGTVSGSIQGQFRRDSQNSTASTYYGSMQSRRSSQS-------------- 858
                  .|...:|...|.....:.         |.:|:.:|  :|.||...              
  Rat   872 ------VFHRALSTHSGITVYDLP---------SASSSLFG--ESLRSGPEDPTFLQLSAVDRCP 919

  Fly   859 SQVSSIPT 866
            ||:||:.|
  Rat   920 SQLSSVYT 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 18/26 (69%)
C2H2 Zn finger 519..541 CDD:275368 18/21 (86%)
zf-H2C2_2 533..560 CDD:290200 21/26 (81%)
C2H2 Zn finger 549..572 CDD:275368 17/22 (77%)
C2H2 Zn finger 580..601 CDD:275368 18/20 (90%)
Glis3XP_038957323.1 C2H2 Zn finger 506..525 CDD:275368 7/18 (39%)
C2H2 Zn finger 536..561 CDD:275368 13/24 (54%)
COG5048 539..>839 CDD:227381 126/348 (36%)
SFP1 <558..652 CDD:227516 75/94 (80%)
C2H2 Zn finger 569..591 CDD:275368 18/21 (86%)
C2H2 Zn finger 599..621 CDD:275368 17/22 (77%)
C2H2 Zn finger 629..651 CDD:275368 19/21 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45718
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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