DRSC/TRiP Functional Genomics Resources

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Protein Alignment ci and zic2a

DIOPT Version :10

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_571633.1 Gene:zic2a / 58077 ZFINID:ZDB-GENE-000710-4 Length:445 Species:Danio rerio


Alignment Length:589 Identity:154/589 - (26%)
Similarity:222/589 - (37%) Gaps:230/589 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 GLGLG-------SADFLGSRGLSSLGELHNAAVAAAAAGSLASTDFHFSVDGNRRLG-------- 198
            |||:|       |:..:..|.||.   ..|:.|.:|..|:       |.::.:...|        
Zfish    11 GLGVGTFARHHHSSSEMQDRDLSL---AQNSFVDSAHMGA-------FKLNHDLSPGQSSAFTSQ 65

  Fly   199 SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRG---SSAASGSYGHIS 260
            :|..|..::.|..:...:.:|||:              ||....:..|||   ||.|.|.:....
Zfish    66 APGYPAAALGAHAAHVTSYASSPF--------------NSTRDFLFRSRGFGESSPAGGQHALFG 116

  Fly   261 ATALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSD 325
            .|| ..:.|.|:    ..|.|       :|.|...:|..:.|                 .||:.:
Zfish   117 PTA-GSLHHSHT----DSQGH-------ILFPGIHEQHGSHG-----------------SPNVLN 152

  Fly   326 SHIQITTSPTVTKDVSQVPAAAFSLKNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQL 390
            ..:::                                                            
Zfish   153 GQMRL------------------------------------------------------------ 157

  Fly   391 SDRCYNNVVNNITGIPGDV--------KVNS-RLDEYINCGSISIPSNEYDCAN----ADTTDIK 442
                         |:||:|        :|:| |.|.|    |.:...|:|...|    .:.....
Zfish   158 -------------GLPGEVFGRSDQYHQVSSPRTDPY----SAAQLHNQYGSMNMNMGMNMAAHH 205

  Fly   443 DEPGDFI----------ETNCHW----------RSCRIEFITQDELVKHINNDHI----QTNKKA 483
            ..||.|.          |..|.|          :||...|.|..|||.|::.:|:    |:|   
Zfish   206 HHPGAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSN--- 267

  Fly   484 FVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYT 548
            .:|.||:|.|..|||||:|.||.|:|.||||||..|.|.||.|.::|.||||.|.|:||||||:.
Zfish   268 HICFWEECPRESKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQ 332

  Fly   549 CEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKH 613
            ||:.||.:.|:|:|||.||.: .|:::|||:||.  |.|.||.|||||||:|.           |
Zfish   333 CEFEGCDRRFANSSDRKKHMH-VHTSDKPYLCKM--CDKSYTHPSSLRKHMKV-----------H 383

  Fly   614 KGLPLNDANSRLQQNNSRHNLQEHNIDSSPCSEDSHLGKM-LGTSSPSIKSESD--------ISS 669
            :..|...                   ||||.:...:.... .|..|||.:::|:        :.|
Zfish   384 ESSPPAS-------------------DSSPAASSGYESSTPPGLVSPSTETQSNNNLSPSSAVHS 429

  Fly   670 SNHH 673
            ||:|
Zfish   430 SNNH 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..>521 CDD:463886 11/17 (65%)
SFP1 <513..603 CDD:227516 51/89 (57%)
C2H2 Zn finger 519..541 CDD:275368 12/21 (57%)
zf-H2C2_2 533..560 CDD:463886 16/26 (62%)
C2H2 Zn finger 549..572 CDD:275368 11/22 (50%)
C2H2 Zn finger 580..601 CDD:275368 13/20 (65%)
zic2aNP_571633.1 zf_ZIC 218..263 CDD:436441 12/44 (27%)
C2H2 Zn finger 275..295 CDD:275368 12/19 (63%)
SFP1 <297..381 CDD:227516 50/86 (58%)
C2H2 Zn finger 303..325 CDD:275368 12/21 (57%)
C2H2 Zn finger 333..355 CDD:275368 11/22 (50%)
C2H2 Zn finger 363..383 CDD:275368 14/32 (44%)

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