DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ci and gli2b

DIOPT Version :9

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001015069.1 Gene:gli2b / 548610 ZFINID:ZDB-GENE-050523-1 Length:1363 Species:Danio rerio


Alignment Length:1606 Identity:445/1606 - (27%)
Similarity:609/1606 - (37%) Gaps:543/1606 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 CNENTLLGNAGHQH---------NHQPQHV--------------HNINVTGQPHDFHPAYRIPGY 118
            |..:.|.||...:.         :..|.|:              |.......||..|..:..||.
Zfish    14 CKSSPLEGNVFSEMPKKPSPSSLSRGPHHIFPTFHSPIPIDVRHHEGRYHYDPHALHALHGPPGL 78

  Fly   119 ME-------QLYSLQRTNSASSFHDP--YVNCASAFHL-------------AGLGLGSA----DF 157
            ..       .|..|....:..:|..|  ||:.....:|             |..||..|    :.
Zfish    79 AGSPVISDISLIRLSPGAAGEAFLPPHSYVSPHVEHYLRSAHSSPTLSMISAARGLSPAEVAHEH 143

  Fly   158 LGSRGLSSL----------------------GE-LHNAAVAAAAAGSLASTDFHFSVDGNRRLGS 199
            |..|||..|                      || |...|.|||||..|  .::..|||.: |..|
Zfish   144 LKERGLFGLPPPPGASPADYYHLMAGHRNPYGELLMQGAGAAAAAAHL--PEYFTSVDVS-RFPS 205

  Fly   200 PRPPGGSIRASISRKRALSSSPYSD-SFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISATA 263
            ||     :...:|||||||.||.|| |.|:.:|||.|||||...:|.||.|||||.||||:|...
Zfish   206 PR-----MTPRLSRKRALSISPLSDASIDLQTMIRTSPNSLVAYINNSRSSSAASSSYGHLSVGG 265

  Fly   264 LNP-MSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAAS--GFS-IGHMP--TSASLRVNDVHPN 322
            ::| ....||                 :||:..||:...  |.| .||.|  ...|...:..|| 
Zfish   266 ISPSFPFPHS-----------------INPVAYQQLLTQQRGLSAFGHTPPLIQPSPTFSSRHP- 312

  Fly   323 LSDSHIQI-TTSPTVTKDVSQVPAAAFSLKNLDDAREK-----KGPFKDVVPEQPSSTSGGVAQV 381
            ||.|.:.. ||:.|.||:.:...|.:.::..|.:.|.|     .|| :.|.|..|...|      
Zfish   313 LSLSTLPTPTTNDTETKNSNGESAVSSTVNPLGNKRSKVKTELGGP-RPVSPYSPEHLS------ 370

  Fly   382 EADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPG 446
                 |:|                  |:|                         .|..|.|.|..
Zfish   371 -----SAQ------------------DLK-------------------------EDMDDCKQEAE 387

  Fly   447 DFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRH 511
            ...||||||..|..|:.||::||.||||:||...||.|||||::|:|.:||||||||||||||||
Zfish   388 LVYETNCHWEGCSKEYDTQEQLVHHINNEHIHGEKKEFVCRWDECSREQKPFKAQYMLVVHMRRH 452

  Fly   512 TGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEK 576
            |||||||||||||.||||||||||||||||||||||.||:.||:|||||||||||||||||||||
Zfish   453 TGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEK 517

  Fly   577 PYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKG-LPL----------NDANS-----RL 625
            ||:||.||||||||||||||||||||||.|.:..||.:| ||.          |:|.:     ::
Zfish   518 PYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDLPSRPHPPKENGENEAGAKMAEEKI 582

  Fly   626 QQNNSRHNLQEHNIDSSPCSEDSHLGKMLGTSSP----SIKSE-SDISSSNHHLVNGVRASDSLL 685
            :.|::...::::....|..:|:|    |:..|||    |..|| |.:.|::.|            
Zfish   583 EANSTTRGVEDYLQVKSIKTENS----MMYQSSPGGQSSCSSEPSPLGSASLH------------ 631

  Fly   686 TYSPDDLAENLNLDDGWNCDDDVDVADLPIVLRAMVNIGNGNASASTIGGSVLARQRFRGRLQTK 750
                                                  |.|...|...||||       |.|.. 
Zfish   632 --------------------------------------GGGVEPAGLSGGSV-------GDLSA- 650

  Fly   751 GINSSTIMLCNIP--ESNRTFGISELN--------QRITELKME-----------PGTDAEIKIP 794
                    |.::|  :|..:.||..|:        .|:|.||.|           ..|.......
Zfish   651 --------LDDVPIVDSTVSTGILGLHLRKNAGPAHRLTHLKQEKLKSVRDSCSWANTAPPAPCT 707

  Fly   795 KLPNTTIGGYTE---DPLQNQTSFR--NTVSNKQGTVSGSIQGQFRRDSQNSTASTYY------- 847
            |||....|...:   ||..:.:|.|  :....:...:|..::   ||||..||.|:.|       
Zfish   708 KLPPINTGSLLDGLCDPGLSISSPRLGDLCPGETTVLSQLVE---RRDSLASTVSSAYTFSRRSS 769

  Fly   848 ---GSMQSRRSSQSSQVSSIPTMRPNPSCNSTASFYDPISPGCSRRSSQMSNGANCNSFTSTSGL 909
               ....||||||:||    |..|.|..  |:|..|||||...|||||:.|......|.|.....
Zfish   770 GISPCYSSRRSSQTSQ----PGGRHNNI--SSADSYDPISTDLSRRSSEASLYGGIFSLTPAQHY 828

  Fly   910 PVLNKESNKSLNACINKPNIGVQGVGIYNSSLPPPP-----------SSHLIATNLKRLQRK--D 961
            .:..|.:..:..|                   ||.|           .||.|..:...:.|:  |
Zfish   829 RLKAKYAAATGGA-------------------PPTPLPNIDCKTLLGDSHEIPIHPPLVPRRCSD 874

  Fly   962 SEYHNFTSGRFSVPSYMHSLHIKNNKPVGENEFDKAIASNARRQTDPV---------------PN 1011
            :.|.|    |..:|                   .:..|:..||.:|||               |.
Zfish   875 TGYAN----RSVLP-------------------HEVTANITRRASDPVRRIAAERHSLYNSVNPY 916

  Fly  1012 INLDPLTNISRFSTTPHSFDINVGKTNNIASSINKDNLRKDLFTVSIKADMAMTSDQHPNERINL 1076
            ..|.||.:...|.:|..| ::|..:....|.||:::.:.:.|                |::..:.
Zfish   917 PTLHPLASSRHFYSTSES-NVNRQQYPPRAPSISENVMMETL----------------PDDMESC 964

  Fly  1077 DEVEE-LILPDEMLQYLNLVK-DDTNHLEKEHQAVPVGSNVSETIASNHYREQSNIYYTNKQILT 1139
            :.||: |::.|:.:|.:.... |...|....|:....||.....:.......:.|:....:|..:
Zfish   965 NGVEDGLMMADDAVQCITTQNADSPQHTGVAHRNQSFGSPQHCHLQRRLALVEGNMNAVARQTAS 1029

  Fly  1140 PPSNVDIQPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMN----T 1200
            .........|.||..:..::           .|:|:..|.:.....|..|.....|:..|    .
Zfish  1030 SQQTFPGSANATKIPMPVQW-----------NEVSSGTVDSSRSQTKQGSGRGNLQQKQNLSSFL 1083

  Fly  1201 DIGSKQQSALPSAH------QRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETENIFKVHGDHD 1259
            ::.|.||..|.|.:      ||..|       .:|...:..:.|.:.::.        .:.|...
Zfish  1084 NVNSNQQVGLMSHNLALSPVQRSVE-------FNSLRINQRQANAEFLHG--------YLQGSAS 1133

  Fly  1260 NEIQCGIISQS-------------------QMSPSTNLNNDGQFS---------TVNMQPITTSK 1296
            |:|..|:::.|                   ..|.:|..||.|.:|         .|..|.:..:.
Zfish  1134 NDISLGLLNPSGKSLTVQPGGVQNNRVCAQAQSHATFPNNQGNYSQMSSNQQGYIVASQNVNGNL 1198

  Fly  1297 LFPPEPQKIVCDTQASNTSVMH---------------LDTYQRTLEYVQS--------------- 1331
            |..|.|     .|:....|..|               .||.:.:.:...|               
Zfish  1199 LLQPRP-----PTEPKPYSTQHSGPTTTAAQSNFSPAYDTSEASPKKSSSMFYTGQIHMFDSSGA 1258

  Fly  1332 --CQNWMETNNTSTNQIQSL-------------------------------PGM----------- 1352
              |.:  ...:..|||:.|.                               |.:           
Zfish  1259 MPCPS--SVGSPETNQVSSTVDSSGADPPQIDFDAMLDDGDHSSLMSGTLSPALLRSLSQNSSRL 1321

  Fly  1353 --PVNNTLFPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMM 1396
              |.|:...|.|::..     :||.|.||::.||:|.||:::|.||
Zfish  1322 TTPRNSVTLPPVAAGI-----SNMAIGDMSSMLTALAEESKFLNMM 1362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 25/26 (96%)
C2H2 Zn finger 519..541 CDD:275368 20/21 (95%)
zf-H2C2_2 533..560 CDD:290200 22/26 (85%)
C2H2 Zn finger 549..572 CDD:275368 19/22 (86%)
C2H2 Zn finger 580..601 CDD:275368 19/20 (95%)
gli2bNP_001015069.1 C2H2 Zn finger 430..452 CDD:275368 16/21 (76%)
zf-H2C2_2 444..471 CDD:290200 25/26 (96%)
C2H2 Zn finger 460..482 CDD:275368 20/21 (95%)
zf-H2C2_2 474..501 CDD:290200 22/26 (85%)
C2H2 Zn finger 490..513 CDD:275368 19/22 (86%)
C2H2 Zn finger 521..542 CDD:275368 19/20 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 112 1.000 Domainoid score I6130
eggNOG 1 0.900 - - E33208_3BFAM
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 431 1.000 Inparanoid score I1687
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003548
OrthoInspector 1 1.000 - - otm24322
orthoMCL 1 0.900 - - OOG6_104319
Panther 1 1.100 - - O PTHR45718
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2040
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.910

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