DRSC/TRiP Functional Genomics Resources

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Protein Alignment ci and Zic4

DIOPT Version :10

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_011241021.1 Gene:Zic4 / 22774 MGIID:107201 Length:403 Species:Mus musculus


Alignment Length:83 Identity:15/83 - (18%)
Similarity:33/83 - (39%) Gaps:18/83 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 IREINTKWLQEMENPRRTRVFTVSQRFQVKENLKAVYLSERIVASVLGSLLLFGSGLLALSFNLL 275
            |.|:|..|.:::   |:|               :|:.:....:.:.:|..:....|.|.:.....
Mouse   484 IAELNETWEEKL---RKT---------------EAIRMEREALLAEMGVAIREDGGTLGVFSPKK 530

  Fly   276 SPFTVHIGENMMFCYPLL 293
            :|..|::.|:.:....||
Mouse   531 TPHLVNLNEDPLMSECLL 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..>521 CDD:463886
SFP1 <513..603 CDD:227516
C2H2 Zn finger 519..541 CDD:275368
zf-H2C2_2 533..560 CDD:463886
C2H2 Zn finger 549..572 CDD:275368
C2H2 Zn finger 580..601 CDD:275368
Zic4XP_011241021.1 zf_ZIC 179..223 CDD:436441
COG5048 <200..345 CDD:227381
C2H2 Zn finger 235..255 CDD:275368
C2H2 Zn finger 263..285 CDD:275368
C2H2 Zn finger 293..315 CDD:275368
C2H2 Zn finger 323..345 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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