DRSC/TRiP Functional Genomics Resources

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Protein Alignment ci and Zic2

DIOPT Version :10

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_033600.3 Gene:Zic2 / 22772 MGIID:106679 Length:529 Species:Mus musculus


Alignment Length:567 Identity:159/567 - (28%)
Similarity:214/567 - (37%) Gaps:185/567 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 GLSSLGELHNAAVAAAAAGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSF 226
            |:.|....|:.:.|||||.:....|        |.|                             
Mouse    13 GVGSFARHHHHSAAAAAAAAAEMQD--------REL----------------------------- 40

  Fly   227 DINSMIRFSPNSLATIMNGSRGSSAASGSYGHISATALNPMSHVHSTRLQQIQAHLLRASAGLLN 291
                       |||...||...|:||     |:.|..|||.:|              ..|.|..:
Mouse    41 -----------SLAAAQNGFVDSAAA-----HMGAFKLNPGAH--------------ELSPGQSS 75

  Fly   292 PMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSP--TVTKDVSQVPAAAFSLKNLD 354
            ..|.|...|...|......:|:|     .|:.  :|:...:.|  ..|:|.      .|..:...
Mouse    76 AFTSQGPGAYPGSAAAAAAAAAL-----GPHA--AHVGSYSGPPFNSTRDF------LFRSRGFG 127

  Fly   355 DAREKKGPFKDVVPEQPSSTSGGVAQVEADSAS--------SQLSDRCYNNVVNN--ITGIPGDV 409
            |:....|......|     .:||:....:|:..        .|.......||:|.  ..|:||:|
Mouse   128 DSAPGGGQHGLFGP-----GAGGLHHAHSDAQGHLLFPGLPEQHGPHASQNVLNGQMRLGLPGEV 187

  Fly   410 ---------KVNSRLDEYINCGSISIPSNEYD-----------CANADTTDIKDEPGDFI----- 449
                     ..:.|.|.|    |.:...|:|.           .|.|........||.|.     
Mouse   188 FGRSEQYRQVASPRTDPY----SAAQLHNQYGPMNMNMGMNMAAAAAHHHHHHHHPGAFFRYMRQ 248

  Fly   450 -----ETNCHW----------RSCRIEFITQDELVKHINNDHI----QTNKKAFVCRWEDCTRGE 495
                 |..|.|          :||...|.|..|||.|::.:|:    |:|   .||.||:|.|..
Mouse   249 QCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSN---HVCFWEECPREG 310

  Fly   496 KPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSN 560
            |||||:|.||.|:|.||||||..|.|.||.|.::|.||||.|.|:||||||:.||:.||.:.|:|
Mouse   311 KPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDRRFAN 375

  Fly   561 ASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRL 625
            :|||.||.: .|:::|||:||.  |.|.||.|||||||:|.                        
Mouse   376 SSDRKKHMH-VHTSDKPYLCKM--CDKSYTHPSSLRKHMKV------------------------ 413

  Fly   626 QQNNSRHNLQEHNIDSSPCSEDSHLGKM-LGTSSPSIKSESDISSSN 671
                  |.......:|||.:...:.... .|..|||.:.:   ||||
Mouse   414 ------HESSPQGSESSPAASSGYESSTPPGLVSPSAEPQ---SSSN 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..>521 CDD:463886 11/17 (65%)
SFP1 <513..603 CDD:227516 51/89 (57%)
C2H2 Zn finger 519..541 CDD:275368 12/21 (57%)
zf-H2C2_2 533..560 CDD:463886 16/26 (62%)
C2H2 Zn finger 549..572 CDD:275368 11/22 (50%)
C2H2 Zn finger 580..601 CDD:275368 13/20 (65%)
Zic2NP_033600.3 zf_ZIC 249..294 CDD:436441 12/44 (27%)
C2H2 Zn finger 306..326 CDD:275368 12/19 (63%)
SFP1 <328..412 CDD:227516 50/86 (58%)
C2H2 Zn finger 334..356 CDD:275368 12/21 (57%)
C2H2 Zn finger 364..386 CDD:275368 11/22 (50%)
C2H2 Zn finger 394..414 CDD:275368 14/51 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 405..451 17/78 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 475..529
Blue background indicates that the domain is not in the aligned region.

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