DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ci and Gli1

DIOPT Version :9

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001178839.1 Gene:Gli1 / 140589 RGDID:621673 Length:1109 Species:Rattus norvegicus


Alignment Length:1423 Identity:377/1423 - (26%)
Similarity:528/1423 - (37%) Gaps:534/1423 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 LGSRGLSSLGELHNAAVAAAAAGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPY 222
            :|:.|||.|...|.|...:.:.|..::.:.....:|:.   .| ||..|::  :::|||||.||.
  Rat    30 MGTEGLSGLPFCHQANFMSGSQGYGSARETSSCTEGSL---FP-PPRSSVK--LTKKRALSISPL 88

  Fly   223 SD-SFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISATALNP-------MSHVHSTRLQQIQ 279
            || |.|:.::||.||:||...:| ||.:| ..|||||:|...::|       |||...|      
  Rat    89 SDASLDLQTVIRTSPSSLVAFIN-SRCTS-PGGSYGHLSIGTMSPSLGFPPQMSHQKGT------ 145

  Fly   280 AHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVP 344
                 :....:.|..|           |..|..|:.   :||.                  |:.|
  Rat   146 -----SPPYGVQPCVP-----------HDSTQGSMM---LHPQ------------------SRGP 173

  Fly   345 AAAFSLKNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDV 409
            .|...||:..|....|      .||:|         :|.|.:|...:     :..:::.|:    
  Rat   174 RATCQLKSELDIMVGK------CPEEP---------LEGDMSSPNST-----STQDHLLGM---- 214

  Fly   410 KVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINN 474
                 ||     |...:...|           |.||....||:|.|..|..||.:|::||.|||:
  Rat   215 -----LD-----GREDLEREE-----------KPEPESVYETDCRWDGCSQEFDSQEQLVHHINS 258

  Fly   475 DHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLR 539
            :||...:|.|||.|..|:|..:||||||||||||||||||||||||||||.|:||||||||||||
  Rat   259 EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 323

  Fly   540 SHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHG 604
            ||||||||.||..||||||||||||||||||||||||||:||.||||||||||||||||||||||
  Rat   324 SHTGEKPYMCEQEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 388

  Fly   605 AEFYANKKHKG---LPLNDANSRLQQNNSRHNLQEHNIDSSPCSEDSHLGKMLGT---SSPSIKS 663
            .:.:..|:|:|   ||.....|.::....|        :.....|:|.|....||   .||..:|
  Rat   389 PDAHVTKRHRGDGPLPRAQPLSTVEPKRER--------EGGSGREESRLTVPEGTMPQQSPGAQS 445

  Fly   664 ESDISSSNHHLVNGVRASDSLLTYSPDDLAENLNLDDGWNCDDDVDVADLPIVLRAMVNIGNGNA 728
                |.|:.|...|..|                      |.|..|::|              |||
  Rat   446 ----SCSSDHSPAGSAA----------------------NTDSGVEMA--------------GNA 470

  Fly   729 SASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISEL----NQRITEL-KMEPGTD 788
                 |||            |:.::|.....|     ....|:|.|    |.|:.:| ::.|...
  Rat   471 -----GGS------------TEDLSSLDEGPC-----VAATGLSTLRRLENLRLDQLHQLRPIGS 513

  Fly   789 AEIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQG-TVSGSIQGQFRRDSQNSTASTYYGSMQS 852
            ..:|:|.|  |..|.              .||.:.| .||                       ..
  Rat   514 RGLKLPSL--THAGA--------------PVSRRLGPPVS-----------------------LD 539

  Fly   853 RRSSQSSQVSSIPTMRPNPSCNSTASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLPVLNKESN 917
            ||||.||.:||..|:      :..:|...|..||     |...|||        |.||.|....:
  Rat   540 RRSSSSSSISSAYTV------SRRSSLASPFPPG-----SPPENGA--------SSLPGLTPAQH 585

  Fly   918 KSLNACINKPNIGVQGVGIYNSSLPPPPSSHLIATNLKRL-------QRKDSEYHNFTSGRFSVP 975
            ..|.|    .....:|.|      .||.::|    :|.|:       .|..:||          |
  Rat   586 YMLRA----RYASARGSG------TPPTAAH----SLDRIGGLPAPPWRSRAEY----------P 626

  Fly   976 SYMHSLHIKNNKPVGENEFDKAIASNARRQTDPVPNINLDPLTNISRFST-----TPHSFDINVG 1035
            .|..:                  |...||.:||....:......:.||.:     ||.|      
  Rat   627 GYNPN------------------AGVTRRASDPARAADHPAPARVQRFKSLGCVHTPPS------ 667

  Fly  1036 KTNNIASSINKD-NLRKDLFTVSIKADMAMTSDQHPN--ERINLD--------EVEELILPDEML 1089
                :|:..|.| :|...::           |.|.|:  |.:.:|        ||...::.:::.
  Rat   668 ----VATGRNFDPHLPTSVY-----------SPQPPSITENVAMDTRGLQGELEVGTSMMGNDLN 717

  Fly  1090 QYLNLVKDDT------------NHLEKEHQAVPVGSNVSETIASNHYREQSNIYYTNKQILTP-- 1140
            .|::....||            ::..|...::|:|..........|..:|  :.|.:.   ||  
  Rat   718 PYMDFSSADTLGYGGPEGTAAESYGSKGPGSLPLGPGPPTNYGPGHCAQQ--VSYPDP---TPET 777

  Fly  1141 ----PSNVDIQPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMNTD 1201
                ||:..:.|.|           .|:|.:::|                |....|..|..:..:
  Rat   778 WGEFPSHAGVYPGT-----------KALGTAYNQ----------------CPRLEHYGQVQVKPE 815

  Fly  1202 ----IGSKQQSALPSAHQRQTEK--------SNYNQI-----IDS-----------SMTSLPELN 1238
                :||......|..:...:|.        |:::|:     :.|           |:.|.|.||
  Rat   816 QGCPVGSDSTGLAPCLNAHPSEGSPDPQPLFSHHSQLPPPQYLQSGPYPQPPHDCLSLESRPGLN 880

  Fly  1239 VDSIYPRNETENIFKVHGDHDNEIQCGII-------------------------------SQSQM 1272
            .:   |.:.:....|.      ::.|..:                               ||...
  Rat   881 FN---PSSHSTGQLKA------QLLCNYVQSQQELLWEGRSRGGIPNQELPYQSPKFLGGSQVSQ 936

  Fly  1273 SP-----------------STNLNNDGQFS---------TVNM-------QPITTSKLFP----- 1299
            ||                 |..|.|....|         |..|       :|....:|.|     
  Rat   937 SPTKVPAAAAAATFGSGFASPALANHKSVSYPAPSPCHETFTMGVNRPPHRPAAPPRLLPPLPPC 1001

  Fly  1300 ----------------------------PEPQKIVCDTQASNTSVMHLDTYQRTLEYVQSCQNWM 1336
                                        |.|:..||:...|    :.||..|  |::|       
  Rat  1002 YGPLKVGDANPSCGHPEVGRLGAGPALYPPPEGQVCNPLDS----LDLDNTQ--LDFV------- 1053

  Fly  1337 ETNNTSTNQIQSLPGMPVNNTLFPDVSSSTHPYHG-TNMVINDMTTSLTSLLEENRYL 1393
                ...::.|.|...|.:..  .|.|.:|.|..| .||.:.:|:..|.||..|.::|
  Rat  1054 ----AILDEAQGLSPPPSHEQ--GDSSKNTPPPSGPPNMAVGNMSVLLGSLPGETQFL 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 24/26 (92%)
C2H2 Zn finger 519..541 CDD:275368 19/21 (90%)
zf-H2C2_2 533..560 CDD:290200 23/26 (88%)
C2H2 Zn finger 549..572 CDD:275368 20/22 (91%)
C2H2 Zn finger 580..601 CDD:275368 19/20 (95%)
Gli1NP_001178839.1 COG5236 <196..>433 CDD:227561 144/274 (53%)
FOXP-CC 237..>265 CDD:292777 13/27 (48%)
zf-H2C2_2 287..314 CDD:290200 24/26 (92%)
C2H2 Zn finger 303..325 CDD:275368 19/21 (90%)
zf-H2C2_2 317..344 CDD:290200 23/26 (88%)
C2H2 Zn finger 333..356 CDD:275368 20/22 (91%)
C2H2 Zn finger 364..385 CDD:275368 19/20 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10387
eggNOG 1 0.900 - - E33208_3BFAM
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44549
orthoMCL 1 0.900 - - OOG6_104319
Panther 1 1.100 - - LDO PTHR45718
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.860

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