DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ci and Gli3

DIOPT Version :9

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_536330.2 Gene:Gli3 / 140588 RGDID:620272 Length:1582 Species:Rattus norvegicus


Alignment Length:1684 Identity:474/1684 - (28%)
Similarity:654/1684 - (38%) Gaps:576/1684 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SPCINQHHPTDVSSSVTVPS-----IIPTGGTSDSIKTSIQPQICNENTLLGNAGHQHNHQPQHV 97
            ||....|.|:.:|||.|.|.     |.|....:.:.::...|                       
  Rat   151 SPIPPLHVPSALSSSPTYPDLPFIRISPHRNPTAASESPFSP----------------------- 192

  Fly    98 HNINVTGQPHDFHPAYRIPGYMEQLYSLQRTNSASSF---------HDPY--VNCASAFHLAGLG 151
                    ||.:     |..||:.:.||..:.|.|..         ..|:  |:.|..:|...|.
  Rat   193 --------PHPY-----INPYMDYIRSLHSSPSLSMISAARGLSPTDAPHAGVSPAEYYHQMALL 244

  Fly   152 LGS----ADFLGSRGLSSLGELHNAAVAAAAAGSLASTDFHFSVDGNRRLGSPRPPGGSIRASIS 212
            .|.    ||.|.|...:..|.:|              .::..::| :.|..|||     :.|..|
  Rat   245 TGQRSPYADILPSAATAGAGAIH--------------MEYLHAMD-STRFPSPR-----LSARPS 289

  Fly   213 RKRALSSSPYSD-SFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISATALNP---------- 266
            |||.||.||.|| |||:.:|||.|||||.||:|.||.||:|||||||:||:|::|          
  Rat   290 RKRTLSISPLSDHSFDLQTMIRTSPNSLVTILNNSRSSSSASGSYGHLSASAISPALSFTYPSAP 354

  Fly   267 -MSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQI 330
             ..|:|    |||              ::.||...|.|  ||.|..       :||        .
  Rat   355 VSLHMH----QQI--------------LSRQQSLGSAF--GHSPPL-------IHP--------A 384

  Fly   331 TTSPTVTKDVSQVPAAAFSLKNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCY 395
            .|.|| .:.:..:|..      |:..:...||.:.   .|...||        :||.|...|..:
  Rat   385 PTFPT-QRPIPGIPTV------LNPVQVSSGPSES---SQSKPTS--------ESAVSSTGDPMH 431

  Fly   396 NNVVNNITGIPGDVKVNSRLDEYINCGSISIPS-----NEYDCANADTTDIKDEPGDFIETNCHW 455
            |.        ...:|.:..|....:.|....|.     .|    ..|..:.|.||....||||||
  Rat   432 NK--------RSKIKPDEDLPSPGSRGQQEQPEGTTLVKE----EGDKDESKQEPEVIYETNCHW 484

  Fly   456 RSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT 520
            ..|..||.|||:||.|||||||...||.|||||.||:|.:|||||||||||||||||||||||||
  Rat   485 EGCTREFDTQDQLVHHINNDHIHGEKKEFVCRWLDCSREQKPFKAQYMLVVHMRRHTGEKPHKCT 549

  Fly   521 FEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGC 585
            ||||.||||||||||||||||||||||.||:.||:|||||||||||||||||||||||:||.|||
  Rat   550 FEGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGC 614

  Fly   586 TKRYTDPSSLRKHVKTVHGAEFYANKKHKG------LPLNDANSRLQQNNSRHNLQ-----EHNI 639
            |||||||||||||||||||.|.:..||.:|      .|..|:.|..|..:.....|     :..:
  Rat   615 TKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDMHPRPPPPRDSGSHSQSRSPGRPTQGAFGEQKEL 679

  Fly   640 DSSPCSEDSHL------GKMLGTSSPSIKSESDISSSNHHLVNGVRASDSLLTYSPDDLAENLNL 698
            .::....:..|      .:...||.||...:|..||....:.|          ||...|  .|.|
  Rat   680 SNTTSKREECLQVKTVKAEKPMTSQPSPGGQSSCSSQQSPISN----------YSNSGL--ELPL 732

  Fly   699 DDGWNCDDDVDVADLPIVLRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIP 763
            .||.:..|...:.:.||:        :...|.:|   :.||.|..|....||.:..  |.|..:.
  Rat   733 TDGGSIADLSAIDETPIM--------DSTISTAT---TALALQGRRNPAGTKWMEH--IKLERLK 784

  Fly   764 ESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTT------IGGYTEDPLQNQTS-------- 814
            :.|..|  ..||                  |.||:..      ||..|:.. .|.:|        
  Rat   785 QVNGMF--PRLN------------------PILPSKAPAVSPLIGNGTQSN-NNYSSGGPGTLLP 828

  Fly   815 FRNTVSNKQGTVSGSIQGQFRRDSQNSTASTYYGS----------MQSRRSSQSSQVSSIPTMRP 869
            .|:.:|....||..::.   ||||..||.|:.|.|          ..|||||::||...      
  Rat   829 SRSDLSGVDFTVLNTLN---RRDSNTSTISSAYLSSRRSSGISPCFSSRRSSEASQAEG------ 884

  Fly   870 NPSCNSTASFYDPISPGCSRRSSQMSNGANCNSFTS----------------TSG-----LPVLN 913
            .|...|.|..|||||...|||||:.|.|....|..|                |.|     ||.:.
  Rat   885 RPQNVSVADSYDPISTDASRRSSEASQGDGLPSLLSLTPVQQYRLKAKYAAATGGPPPTPLPHME 949

  Fly   914 KESNKSLNACINK-PNIGVQGVGIYNSSLPP--PPSSHLIATNLKRLQRKDSEYHNFTSGRFSVP 975
            |.|.|:..|.:.: .:.||        :|||  ||.           :..|...|.: |.|..:|
  Rat   950 KLSLKTRMALLGEGRDSGV--------TLPPVHPPR-----------RCSDGGGHTY-SRRHLLP 994

  Fly   976 SYMHSLHIKNNKPVGENEFDKAIASNARRQTDPVPNINLD-PLTNISRFSTTPHSFDINVGKTNN 1039
               |.                |:|::|||.:|||..::.: .|..:.|||:      :|.....|
  Rat   995 ---HD----------------ALANSARRASDPVRTVSENMSLPRVQRFSS------LNSFNPPN 1034

  Fly  1040 IASSINKDNLRKDLFT----------------------VSIKADMAMTSDQHPNERINLDEVEEL 1082
            :..|:.|.:|....:|                      |:::| :.|.:|...|        :|.
  Rat  1035 LPPSVEKRSLVLQNYTRQESTHPRYFQASPCPPSITENVALEA-LTMDADASLN--------DED 1090

  Fly  1083 ILPDEMLQYLNLVKDDTNHLEKEHQAVPVGSNVSET--------IASNHYREQSNIYYTNKQILT 1139
            .|||:::|||| .::.|.:.::...::.....|:..        :..:|..:|   |...:|..:
  Rat  1091 FLPDDVVQYLN-SQNQTGYGQQLQSSISEDGKVAREPEDLDLPGLPDSHVGQQ---YPALEQPCS 1151

  Fly  1140 PPSNVD--IQPN----------TTKF------TVQD------------------KFAMTAVGGSF 1168
            ..|..|  ||.|          ::|.      |||.                  |......|||.
  Rat  1152 EGSKTDLPIQWNEVSSGSSDLSSSKLKCGQRPTVQQARGFGLYSNMVVHPQNLWKVGTGPAGGSQ 1216

  Fly  1169 SQRELSTLAVPNEH--GHA------KCESFHHQSQKYMNTDIGSK------QQSALPSA----HQ 1215
            :..|..:.....||  .|:      ..::||.|:  |.....||:      ..|.|.||    .|
  Rat  1217 TLGENGSSYSDPEHFAVHSGDGLGPSGDTFHEQA--YKTQQYGSQLSRQPLTSSVLDSACGAGIQ 1279

  Fly  1216 RQTEKSNYNQ----IIDSSMTSLPELNVDSIYPRNETENIFKVHGDHDNEIQCGIISQSQMSPST 1276
            ....|.|..|    ::|..::..|....|:|....:|:          .::..|.|:...:|.|.
  Rat  1280 GSKLKGNSLQENGGLLDFGLSMAPNELADNIVNGIQTQ----------EQMGQGYIAPQLLSGSM 1334

  Fly  1277 N-----------LNNDGQFSTVNMQ-------PITTSKLFPPEPQKIV-----CD---------- 1308
            .           |...|..|.:|:.       |.|..|:..|....::     |.          
  Rat  1335 QHQGPSRPGQQVLGQVGATSHINIYQGTESCLPGTQDKISQPSSMAVIRGYQPCASYGGSRRQAM 1399

  Fly  1309 ---------------TQASNTSVMHLDTYQRTLEYVQSCQNW----------------------- 1335
                           :|.|..:.:.::.:.::.:...|.||:                       
  Rat  1400 PRGSLTLQQGQLSDVSQTSRVNSIKMEAHGQSHQLCSSMQNYSGQFYDQTMGFSQQDRKAGSFSL 1464

  Fly  1336 ------METNNTSTNQIQSLPGM-PVNNTL----------------------------------- 1358
                  ::.|.:..:::.| ||: .|.:|:                                   
  Rat  1465 SEANCLLQENGSENSELLS-PGVNQVTSTVDSFESHDLEGVQIDFDAIIDDGDHTSLMSGALSPS 1528

  Fly  1359 --------------------FPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMMQ 1397
                                ||.:|.||     |||.|.||::.||||.||:::|.:||
  Rat  1529 IIQNLSHSSSRLTTPRASLPFPSLSMST-----TNMAIGDMSSLLTSLAEESKFLAVMQ 1582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 25/26 (96%)
C2H2 Zn finger 519..541 CDD:275368 20/21 (95%)
zf-H2C2_2 533..560 CDD:290200 22/26 (85%)
C2H2 Zn finger 549..572 CDD:275368 19/22 (86%)
C2H2 Zn finger 580..601 CDD:275368 19/20 (95%)
Gli3NP_536330.2 zf-H2C2_2 532..559 CDD:290200 25/26 (96%)
C2H2 Zn finger 548..570 CDD:275368 20/21 (95%)
zf-H2C2_2 562..589 CDD:290200 22/26 (85%)
C2H2 Zn finger 578..601 CDD:275368 19/22 (86%)
C2H2 Zn finger 609..630 CDD:275368 19/20 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351317
Domainoid 1 1.000 111 1.000 Domainoid score I6104
eggNOG 1 0.900 - - E33208_3BFAM
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 444 1.000 Inparanoid score I1590
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003548
OrthoInspector 1 1.000 - - otm44549
orthoMCL 1 0.900 - - OOG6_104319
Panther 1 1.100 - - O PTHR45718
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2040
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.840

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