DRSC/TRiP Functional Genomics Resources

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Protein Alignment ci and glis2b

DIOPT Version :10

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001276814.1 Gene:glis2b / 102725539 ZFINID:ZDB-GENE-091204-120 Length:489 Species:Danio rerio


Alignment Length:598 Identity:163/598 - (27%)
Similarity:243/598 - (40%) Gaps:198/598 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 ITTSPTVTKDVSQVPAAAFSLKNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASS-----Q 389
            :::||...|...|       |:..||....      :||..|:|...||.:..:::.:.     .
Zfish    30 LSSSPIHGKGAGQ-------LRMADDGTAV------IVPASPASPHTGVLRSNSETPTPPAVDLS 81

  Fly   390 LSDRCYNNV----VNNITG----IPGDVKVNSRLDEYINCGSIS----------------IPSNE 430
            ||....|..    ::|.:|    .|||    |....|:..|:.|                :||:.
Zfish    82 LSPSSRNTACSPELSNGSGSAPVFPGD----SAHIRYVEGGATSQAFQFFVPIGAGGGLHLPSSM 142

  Fly   431 YDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNK-KAFVCRWEDCTRG 494
            :.....||....|...| .:..|.||.|.:.|.:..:||.|:|:.|::..| ..:.|.||.|.|.
Zfish   143 FIRQPKDTRASPDLSAD-EQLACRWRKCHLLFDSLQDLVDHVNDFHVKPEKDSGYCCHWEGCARK 206

  Fly   495 EKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFS 559
            .:.|.|:|.:::|:|.||.||||:|  ..|.|::|||||||.|.|||||||||.|.|.||:|.:|
Zfish   207 GRGFNARYKMLIHIRTHTNEKPHRC--PTCNKSFSRLENLKIHNRSHTGEKPYICPYEGCNKRYS 269

  Fly   560 NASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSR 624
            |:|||.|| .|||..:|||.||..||.||||||||||||:| .|| .|.|.::..|:     .|.
Zfish   270 NSSDRFKH-TRTHYVDKPYYCKMVGCLKRYTDPSSLRKHIK-AHG-HFVAQEQGGGV-----GSL 326

  Fly   625 LQQNNSRHNLQEHNIDSSPCSEDSHLGKMLGTSSPSIKSESDISSSNHHLVNGVRASDSLLTYSP 689
            ::|                 |:.:.:||                             ||.|||  
Zfish   327 IKQ-----------------SQIAGVGK-----------------------------DSELTY-- 343

  Fly   690 DDLAENLNLDDGWNCDDDVDVADLPIVLRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINS 754
                                |:...|::        .:|:|:.:||..|           :|:..
Zfish   344 --------------------VSGAHIII--------PSAAAALLGGHAL-----------QGLGG 369

  Fly   755 STIMLCNIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIG------------GYTED 807
            |      :|       :|.|:.|..:|       :.:..|..|...:|            |.|:.
Zfish   370 S------LP-------LSPLSPRPLDL-------STLGCPNSPTAGLGGTPILSFSSSPLGLTKS 414

  Fly   808 PLQNQTSFRNTVSNKQGTVSGSIQGQFRRDSQNSTASTYYGSMQSRRSSQSSQV-SSIPTMRPNP 871
            ||.:.:...:|:    |.....|.|..|||         :|..:.|......:: ..:..:    
Zfish   415 PLLSPSFSSSTL----GLPMLPILGSERRD---------HGKGKIRGEEGEDEIHGGVLNL---- 462

  Fly   872 SCNSTASFYDPIS 884
               ||.:.:||:|
Zfish   463 ---STGASHDPLS 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..>521 CDD:463886 9/17 (53%)
SFP1 <513..603 CDD:227516 59/89 (66%)
C2H2 Zn finger 519..541 CDD:275368 12/21 (57%)
zf-H2C2_2 533..560 CDD:463886 18/26 (69%)
C2H2 Zn finger 549..572 CDD:275368 13/22 (59%)
C2H2 Zn finger 580..601 CDD:275368 16/20 (80%)
glis2bNP_001276814.1 C2H2 Zn finger 207..223 CDD:275368 5/15 (33%)
COG5048 227..>304 CDD:227381 52/79 (66%)
C2H2 Zn finger 231..251 CDD:275368 12/21 (57%)
C2H2 Zn finger 259..281 CDD:275368 13/22 (59%)
C2H2 Zn finger 289..311 CDD:275368 17/22 (77%)

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