DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ci and gli2

DIOPT Version :9

Sequence 1:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_002943329.3 Gene:gli2 / 100498653 XenbaseID:XB-GENE-481810 Length:1474 Species:Xenopus tropicalis


Alignment Length:1602 Identity:470/1602 - (29%)
Similarity:652/1602 - (40%) Gaps:457/1602 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 HHPTDVSSSVTVPSIIPTGGTSDSIKTSIQPQICNENTLLGNA--GHQHNHQPQHVHNI--NVTG 104
            |.|..:|.|..:         ||.....:.|.      .||.|  ||.|::...|:.:.  :|.|
 Frog    75 HGPPTLSGSPVI---------SDISLIRLSPH------SLGTAEFGHAHHYVSPHMEHYLRSVHG 124

  Fly   105 QPHDFHPAYRIPGYMEQLYSLQRTNSASSFHDPYVNCASAFHLAGLGLGSADFLGSRGL-----S 164
            .|           .:..:.:.:..:.|...|: ::.....|.||..|....::.....:     |
 Frog   125 SP-----------TLSMISAARGLSPAEVAHE-HLKERGIFGLAPPGTAPTEYCHQMAILASHAS 177

  Fly   165 SLGELHNAAVAAAAAGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSD-SFDI 228
            ..||| ....||||||:.|....:.:.....|..|||     :...:|||||||.||.|| |.|:
 Frog   178 PYGEL-LVQSAAAAAGNTAHLHEYLTPMDVSRFSSPR-----VTPRLSRKRALSISPLSDASIDL 236

  Fly   229 NSMIRFSPNSLATIMNGSRGSSAASGSYGHISATALNP-MSHVHSTRLQQIQAHLLRASAGLLNP 292
            .:|||.|||||...:|.||.||||||||||:||.|::| .|..|.                 :||
 Frog   237 QTMIRTSPNSLVAYINNSRSSSAASGSYGHLSAGAISPAFSFPHP-----------------INP 284

  Fly   293 MTPQQVAASGFSI----GHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSLKNL 353
            :..||:.:...|:    ||.|.        :||           |||.                 
 Frog   285 VAYQQLLSQQRSLTSSFGHAPL--------LHP-----------SPTF----------------- 313

  Fly   354 DDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQ-LSDRCYNNVVNNITGIPGDVKVNSRLDE 417
              |..::|......|..||:.|.     ..||..:: .|:...::.||.:  ||...||... ||
 Frog   314 --APRQQGALTSANPAPPSNNSS-----TPDSVLNKGSSESAVSSTVNQV--IPKRSKVKME-DE 368

  Fly   418 YINCGSISIPSNEYDC-ANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNK 481
            .:...|.|.|.:..|. .:.|..:.|.||....||||||..|..||.|||:||.|||||||...|
 Frog   369 GLQRDSPSPPDHLTDLKEDLDKDECKQEPDVIYETNCHWDGCSHEFDTQDQLVHHINNDHIHGEK 433

  Fly   482 KAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKP 546
            |.|||||.||:|.:|||||||||||||||||||||||||||||:|||||||||||||||||||||
 Frog   434 KEFVCRWHDCSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCYKAYSRLENLKTHLRSHTGEKP 498

  Fly   547 YTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANK 611
            |.||:.||:||||||||||||||||||||||||||.||||||||||||||||||||||.|.:..|
 Frog   499 YVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTK 563

  Fly   612 KHKGLPL-----------NDANSRL---QQNNSRHNLQEHNIDS-SPCSEDSHLGKMLGTSSPSI 661
            ||:...:           |:|:::|   :..||....:|..:.: |..:||:    |:..|||..
 Frog   564 KHRNDIIQKPSVTKENGDNEASAKLSGREHPNSAPREREDCLQARSIKTEDN----MMHQSSPGG 624

  Fly   662 KSESDISSSNHHLVNGVRASDSLLTYSPDDLAENLNLDDGWNCDDDVDVADLPIVLRAMVNIGNG 726
            :|......|.:.:.:||..|    .:....|.|...|::           ..|:|...:.:.|.|
 Frog   625 QSSCSSEPSPYGIDSGVDVS----LHGEGGLGELFGLEE-----------TSPVVDSTVSSGGAG 674

  Fly   727 -NASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISELNQRITELKME-PGTDA 789
             .......||:.:.|.....:.:.|.:..|...:...|...        |.|:..:... |..||
 Frog   675 IGLQLRKHGGTAVQRLEQLKKEKLKTVKDSCSFMNPAPPVR--------NTRLPTISANGPSLDA 731

  Fly   790 EIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQGTVSGSIQGQFRRDSQNSTASTYYGS----- 849
             :.:|.  |..:||...:...|:.:..|.::.             ||||..||.|:.|.|     
 Frog   732 -LGVPS--NVLLGGRAAELSMNEVTVLNHLNE-------------RRDSTGSTVSSAYTSRRSSG 780

  Fly   850 ----MQSRRSSQSSQVSSIPTMRPNPSCNSTASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLP 910
                ..|||||::||...    |.|.|  |:|..|||||...|||||:.|         ..||||
 Frog   781 ISPYFSSRRSSETSQFGG----RLNNS--SSADSYDPISTDASRRSSEAS---------QHSGLP 830

  Fly   911 -VLNKESNKSLN------ACINKPNIGVQGVGIYNSSLPPPPSSHLIATNLK-RLQRKDSEYHNF 967
             :||....:...      |....|              ||.|..::...:|: :|...|..    
 Frog   831 NLLNLTPAQQYRLKAKYAAATGGP--------------PPTPLPNMDRISLRNKLSLMDGT---- 877

  Fly   968 TSGRFSVPSYMHSLHIKNNKPVGENEFDKA------IASNARRQTDPVPNINLDP----LTNISR 1022
               .|.:|.: ..|.:......|:.....|      :.:|:||.:|||..|. .|    |..:.|
 Frog   878 ---DFPLPPF-RQLPLPRRCSDGDANPGLAAFPHEILGNNSRRASDPVRRIG-GPEGQALPRVQR 937

  Fly  1023 FSTTPHSFDI-------------NVGKTNNIASSINKDNLRKDLFT---VSIKADMAMTSDQHPN 1071
            |    ||.:.             |.|..:...|.   .:|.:.|::   .||..::||       
 Frog   938 F----HSMNSMNSLHPPALLERRNGGLQHYTRSD---GSLHRHLYSPRPPSITENVAM------- 988

  Fly  1072 ERINLD-EV----EELILPDEMLQYLNLVKDDTNHLEKEHQAVP----VGSNVSETIASNHYR-- 1125
            |.::.| :|    ::|:|||:::|||.     ..:.|...|.:|    :|.|:...:...|:.  
 Frog   989 EAMSCDADVPAGDDDLMLPDDVVQYLR-----AQNREAPEQNLPEYNGLGRNLQSNMKPFHHNPP 1048

  Fly  1126 EQSNI--------YYTNKQILTPPSNVDIQPNTTKFTVQDKFAMTAVGGSFSQRELS--TLAV-- 1178
            ||...        :.|..|.|...:|  :|.|.......:..:.|...|...::.|:  .|||  
 Frog  1049 EQHRAPGPYSGRNFPTLAQCLGQTAN--LQENHLPVQWNEVSSGTVDAGDLPKQPLAPGNLAVVQ 1111

  Fly  1179 -------------------PNEHGHAKCE---SFHHQSQKYM-------------NTDIG----- 1203
                               ||..|....:   |.:.|...||             .:|:|     
 Frog  1112 QKQNFAQYQNFTPAPAQGPPNIMGQESVQRNFSLNGQRFNYMQQRQPQLRQCQNVGSDLGPQQSY 1176

  Fly  1204 SKQQSALPSAHQRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETE---------------NIFK 1253
            |:.||.| |....|..:|.::... ::|...|.:...|. |.|...               |.|.
 Frog  1177 SQNQSML-SPRAMQDGQSQHSPSC-NNMAERPGVPTHSA-PSNTLSHQHLAARAAPTQGFANNFP 1238

  Fly  1254 VHGDHDNEIQCGI---------ISQSQMSPSTN-LNNDGQ-FSTVNMQPITTSKLFPP-EPQKIV 1306
            ::.|       |:         ..|:.:.|..| |...|| |:...:||...:...|| .|:.|.
 Frog  1239 INQD-------GLRPPNAYTVPTQQNGLEPQQNTLGMSGQPFNHGMIQPRPPAAPHPPNRPRNIH 1296

  Fly  1307 CDTQASNTSVMH----LDTYQRTLE--------------------YVQSCQNWMETNNT------ 1341
            ...|.|.....|    |...|:|.|                    |..:..:..|.|.|      
 Frog  1297 PGHQPSYMRSPHPVGDLSPAQQTAEATPKRPSEEADPSPKDNALLYYSAQIHMFEPNGTFSPGID 1361

  Fly  1342 -STNQIQSLPGMPVN---------------------------------NTLFPDVSSS------- 1365
             :..|:.:||....|                                 .||.|.:..|       
 Frog  1362 CTARQLPTLPSPGANQVTSTVDSQGLEQPPVIDFDAMMDDGDHSSLMSGTLSPGLLQSFSQTSSR 1426

  Fly  1366 -THPYHGT----------NMVINDMTTSLTSLLEENRYLQMM 1396
             |.|.:..          ||.|.||::.||:|.||:::|.:|
 Frog  1427 LTTPRNSLTLPSIPAGIGNMAIGDMSSMLTTLAEESKFLNLM 1468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 25/26 (96%)
C2H2 Zn finger 519..541 CDD:275368 20/21 (95%)
zf-H2C2_2 533..560 CDD:290200 22/26 (85%)
C2H2 Zn finger 549..572 CDD:275368 19/22 (86%)
C2H2 Zn finger 580..601 CDD:275368 19/20 (95%)
gli2XP_002943329.3 FOXP-CC 405..>439 CDD:406546 22/33 (67%)
C2H2 Zn finger 441..463 CDD:275368 17/21 (81%)
SFP1 <465..555 CDD:227516 83/89 (93%)
C2H2 Zn finger 471..493 CDD:275368 20/21 (95%)
C2H2 Zn finger 501..524 CDD:275368 19/22 (86%)
C2H2 Zn finger 532..553 CDD:275368 19/20 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5221
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 441 1.000 Inparanoid score I1612
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003548
OrthoInspector 1 1.000 - - otm47586
Panther 1 1.100 - - O PTHR45718
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2040
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.060

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