DRSC/TRiP Functional Genomics Resources

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Protein Alignment PlexB and Plxnb3

DIOPT Version :9

Sequence 1:NP_001245400.1 Gene:PlexB / 43766 FlyBaseID:FBgn0025740 Length:2051 Species:Drosophila melanogaster
Sequence 2:XP_008771853.1 Gene:Plxnb3 / 363517 RGDID:1560615 Length:1920 Species:Rattus norvegicus


Alignment Length:2076 Identity:663/2076 - (31%)
Similarity:1035/2076 - (49%) Gaps:323/2076 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 FTHMSFDFMHNVLFAGATNKILKLNENLRVLAEAVTGPLHDSPQC----HAGGCPEDIETSLVNN 147
            |.|:........|:.||.|.:.:|:..|.:.:.|:|||:.|||.|    ....||   :..|.:|
  Rat    44 FNHLVLAPDQGKLYVGAVNHLFQLSPELEMESVAITGPVIDSPDCVPFRDLAECP---QAQLTDN 105

  Fly   148 FNKILVVSYAHDGILIACGSIRQGACE----------IYSLPRFPATPQFFAVPLAANDENASTY 202
            .|::|:|| :....|:|||.:|||.||          :|. ...|...||    :|||....:|.
  Rat   106 ANQLLLVS-SRAQELVACGQVRQGVCEKRRLGDVTQVLYQ-AEDPGDGQF----VAANTLGVTTV 164

  Fly   203 AFVGPARYAWKEEDILYVGTTFTNVGDYRHDVPAISSRRL-DDLNYAEFSIQQSIINIDVKYRDH 266
            ..|.|.    ...|:|.|....  .|.....||.::.|:| ....::...:.:.::.....|.: 
  Rat   165 GLVVPL----PGRDLLLVARGL--AGKLSAGVPPLTVRQLAGPQPFSSEGLGRLVVGDFSDYNN- 222

  Fly   267 FLVDYIYGFNSSEYAYFIIVQKKSHLADEAGYVTRLARICITDPNYDSYTEITVQCTATENNVDY 331
               .|:..|:.:..|||:..::.:....|  |.:.:||:|:.|.|..||.|:.:.|..      .
  Rat   223 ---SYVGAFSDAHSAYFVFRRRGARAQTE--YRSYVARVCLGDVNLYSYVEVPLTCHG------Q 276

  Fly   332 NIVRDAKVTPASHKLAQKMGIKKDDHVLVTVFSPSREISNQPESKSAMCIYSIKDIEDMFIENIH 396
            .:::.|.:.|               ..|:..||     :...::::|:|.:.:.|::....:...
  Rat   277 GLIQAAFLAP---------------DTLLGAFS-----AGTSQAQAALCAFPLADLDGSMEQARR 321

  Fly   397 LCFNGTTKDRNLGYISGTINDG---RC-------PIVGSLGNIYNFCSVGLKISGVSPITAHALF 451
            ||:....:..| |....|:..|   ||       |.....|:.:    ....|:|..|:.|..|.
  Rat   322 LCYTTGGQGPN-GMEEATVEYGVTSRCVTLPPDSPESYPCGDEH----TPSPIAGRQPLEAQPLL 381

  Fly   452 HFDNVSVTSVTATSTTDQQHSLAFLGTNMGVIKKVLLSGQSPGE--YEEIVVDAGNRILPNTMMS 514
            .... .:::|.|..|  ..|::||||...|.:.||.|: .|.|:  :.:.|...|:.|.|:.::.
  Rat   382 QLGQ-PISAVAALQT--DGHTIAFLGDTEGQLHKVFLN-SSHGQVYHSQQVGPPGSAISPDLLVD 442

  Fly   515 PKKDFLYVLSQRKITKLRIEHCSVYTNCSACLESRDPFCGWCSLEKRCTVRSTCQRDTSASRWLS 579
            ...|:||||:.:::.::.:..|..:.||:.||::|||.||||.|:.|||.|:.|.|....::||.
  Rat   443 NSGDYLYVLTAQQVDRILVA
ACPQFPNCTTCLQARDPLCGWCILQGRCTRRAECGRAVQPNQWLW 507

  Fly   580 LGSGQQCIEFESIIPEKIPISELSHLHLIIRTLPE-PFNAKYRCVFGNSTPIDAEILENGLGCAT 643
            ......|:..:|::|.:.|..|...:.|.:..||. ..:..:.|.||:...: |::.|:.:.|||
  Rat   508 SYEDNHCLHIQSLLPAQHPRQEHGQITLSVPGLPNLAMDEYFYCAFGDYNSL-AQVEEHHVVCAT 571

  Fly   644 PPLDERPLIPTNTDHILVPLSVRSSETNKDFVSRNFAFFDCSH------HGNCQECLQSSWGCNW 702
            ||.|..|..|..:||:.:||::...:.  ...:..|:|:|||.      ...|:.|:.|.|.|:|
  Rat   572 PPQDRMPPNPPGSDHVTLPLALMFEDV--VLAATTFSFYDCSAIQALEVAAPCRTCVSSLWRCHW 634

  Fly   703 CIFDNKCVHKSLQCRNIENAVSTVGH----------CPHLKKNRPEILLPVRVPIEIRLEIENLP 757
            |...:.||:.. :|...|.||.:...          ||.:|......|:||.....:.|.||||.
  Rat   635 CPQSSHCVYGE-RCPEGEKAVYSAQEVDILVRGPEACPQVKGLASPQLVPVGWESHVTLHIENLH 698

  Fly   758 KPKSAHAGFLCTIHIEAAQMLLPAHVE----SNKIVVCEKTPYFYEINTHEYQAKVVVTWNFQHY 818
            ..:...|.:.|.:.:......|||.:|    ::.::.|:...:...::..|....:.||......
  Rat   699 YFRGLPALYYCWLELPGKLRKLPAFLEETSRNSGLIHCQAQQFHPSMSQWELPVPIYVTRGEIQR 763

  Fly   819 VDTA---IVTLYKCDVLGSHREHPDCSLCVTRDPKYKCAWCSN---SCVYNETCIADKNSISSGS 877
            :|..   .||||.| .:|    |||||.|...:....|.||.:   :|.|...|          .
  Rat   764 LDNTGDLHVTLYDC-AMG----HPDCSHCQAANGSLSCLWCGDGQPACRYGPLC----------P 813

  Fly   878 KSAIENECPLPRIDIIKPLSGPVEGGTLITIEGSNLGIREEDVRGKIFIGSVPCELEN--YQISV 940
            ..|:|..||:|.||:|:||:||.|||..|||.|||||....|||..:.:...||..:.  |:||.
  Rat   814 PGAVEQLCPIPSIDVIEPLTGPPEGGLAITILGSNLGQAFNDVRNAVTVAGQPCNPDPSLYRISA 878

  Fly   941 KIECRTGASLYEMSAPIKVA---NDAGFTESSVQFHFKNVLLTGLYPTIGPRSGGTQLSLIGKFL 1002
            :|.|.|..:....|.|::||   ...|.  |:..|.:::.:|..|.|..||::|||||::.|::|
  Rat   879 RIVCVTSPAPNGTSGPVQVAIKSRPPGI--SAQHFTYQDPVLLSLNPQWGPQAGGTQLTIHGQYL 941

  Fly  1003 NIGSTMRAFLDEYECHIDVTQASSSQVSCTTSEATQPEPIRSLHLVIDG-ANRTLECQISTPSIT 1066
            ..|..:.||:.:..|.|. .......:.|.|  ..|.||..::..|:.| ..|.|   ::||   
  Rat   942 QTGGNVSAFVGDQPCPIQ-EPVCPEAIICHT--MPQMEPGEAVVFVVFGHVERKL---LTTP--- 997

  Fly  1067 NTNPTRSNFGSYQLRSLPRQPCSIFNYTQDPRIMQIKPLRSFKSGGRVLTVHGIYLNSIQKPELE 1131
                                    |.||.:|::::.:|..||:.||||:.|.|..|:.:.:|.|.
  Rat   998 ------------------------FRYTANPQLVEAEPSVSFRGGGRVIRVRGTGLDVVWQPLLS 1038

  Fly  1132 VFYDNE-----------RVN-KTSCVVINSNQMECPSPPVNYKFETFKKTNRKMDTELHLQNSSF 1184
            |:.::|           .|| :.||....::...|                      :||::...
  Rat  1039 VWLEDEFQVKALGVQAQDVNPRRSCGAPAADPQAC----------------------IHLESGLL 1081

  Fly  1185 QTETRYKNEYDRKKRRADFGDTFRLYTNAGSSANYFVNNNMDVTTFVKVHETQLNLQLSFVMDNV 1249
            |..|                     ..:..||:....::       ..|.:..|..::.|.:||:
  Rat  1082 QCST---------------------LCSVNSSSLLLCHS-------PAVPDGALPKRVFFALDNM 1118

  Fly  1250 QLVRNLNKYFHDIRST-----IVYLADPKYLPFPNDGV----KLYKGDSLVIEGELLNLAADEYD 1305
            |:         |..|.     .:|..:|:..|..::|:    :|..|..|.:|||.|||...:.:
  Rat  1119 QV---------DFASASGGQGFLYQPNPRLAPLSHEGITHPYRLKPGHVLDVEGEGLNLGISKEE 1174

  Fly  1306 VNVTIGTSQCNITSLALNQLLCIPPEQQPLPTDENGVDQSTDLPLVVVKVGRNLRFVIGYLKYDL 1370
            |.|.||..:|.:.:|.|..|.|.||:|.|.||:.:|.     ||..||::| |:|..:|.::|:.
  Rat  1175 VQVHIGDGKCLVKTLTLTHLYCEPPQQAPQPTNGSGT-----LPQFVVQMG-NVRLALGPVQYEA 1233

  Fly  1371 NKPYV--FSHALLVGI-LTVALLVVVFVIVLIIFRRKSTQAEREYKRIQIQMITLESNVRSECKQ 1432
             :|.:  |.....||: :..|:|:...:::.:::|.||.||.|:|:::.:|:..||:.|..:|::
  Rat  1234 -EPMISTFPVEAQVGLGMGAAMLIAAVLLLTLMYRHKSKQALRDYQKVLVQLENLETGVGDQCRK 1297

  Fly  1433 AFAELQTDMTDLTADLESTGIPTLDHVNYIMKVFFPGVSDHPI---LNSPKFREGSPQTNYDAAM 1494
            .|.:|.|:|||||:|||::|||.||:..|..:.||||....|:   |..|  .|...:......:
  Rat  1298 EFTDLMTEMTDLTSDLEASGIPFLDYRTYAERAFFPGHVGCPLQPGLEGP--GEEGRRVTVCQGL 1360

  Fly  1495 VQFEQLIGNKYFLLMFIETLEAQRSSFSIRDRVNVASLIMVVLMNKMEYATEILKSLLLRLIDKS 1559
            .|...|:.:|.|||..|.|||.| .|||.|||.:||||:.:.|.:|:||.|:|:::||     ..
  Rat  1361 TQLSNLLNSKLFLLTLIHTLEEQ-PSFSQRDRCHVASLLSLALHSKLEYLTDIMRTLL-----GD 1419

  Fly  1560 LAS----KHPQLMLRRTESVVEKMLTNYLAICMYDYLKEYAGSNLFLLFKAIKHQIEKGLVDAIT 1620
            ||:    |:|:|||||||::|||:|||:|:||:|.:|||.||..|::||:|||:|::||.|||:|
  Rat  1420 LAAHYVHKNPKLMLRRTETMVEKLLTNWLSICLYAFLKEVAGEPLYMLFRAIKYQVDKGPVDAVT 1484

  Fly  1621 NDARYSLSEERLLHEQVTHSVVILHIL---------QDDLDEKVQCRVNDWDTISQVKLKILDAI 1676
            ..|:.:|::..||.|.|....:.|..|         .:....:|..||.|.|||:|||.|:||.|
  Rat  1485 GKAKRTLNDSHLLREDVEFRPLTLMALVGPGAGGAAGNSEVHRVPARVLDTDTITQVKEKVLDQI 1549

  Fly  1677 FKNTPFSMRPSVNEVDLEWRHGRGGHLTLQDEDLTTKTVNGWKRLNTLAHYGVKESAVMSLIARQ 1741
            :|.||||.||||:.:|||||.|..|||||.|||||:.|.|.|||||||.||.|.:.|.:.||.:.
  Rat  1550 YKGTPFSQRPSVHSLDLEWRSGLAGHLTLSDEDLTSVTQNHWKRLNTLQHYKVPDGATVVLIPQL 1614

  Fly  1742 NDNYHIPYSKNQNSAPYHNFYFINNSQSHIIINNDIESGLQQP-----------------RVYHL 1789
            ::...:..|..|...  |:    ..|:|   ::.|: |..|:|                 |::||
  Rat  1615 HNGGTVSQSLEQTGC--HS----GESES---LSPDL-SICQEPQLCSDTPMLEDGEEGGVRLWHL 1669

  Fly  1790 VKPNIPDHYMNIKNSVLSGGSPAFQSHVVNNCNDRVN-KTIPEVYLTRLLATKGTIQKFVDDFFS 1853
            ||.........::.|.|.           ....:|.. |.|||:||||||:.|||:||||||.|.
  Rat  1670 VKATEETEGAKVRRSSLR-----------ERERERARAKAIPEIYLTRLLSMKGTLQKFVDDTFQ 1723

  Fly  1854 IILTVNEELPPAVKWLFDLLDEAARRHDIADTDIVHAWKSNCLPLRFWVNFIKNPDFIFDVNKTY 1918
            .||::|..:|.|||:|||.|||.|.:|.|.|.:.:|.||:|.|.||||||.:|||..||||..:.
  Rat  1724 AILSMNRPVPIAVKYLFDFLDELAEKHGIEDPETLHIWKTNSLLLRFWVNALKNPQLIFDVRVSD 1788

  Fly  1919 SVDSCLSVIAQTFMDACSTSEHRLGKDSPSNKLLFAKDIPNYRIMVKEFYRDVSRLPQISDQEMS 1983
            :.|:.|:||||||:|:|..|||::|:|||.||||:|::||.|:.||:::|.|:.:....|.|||:
  Rat  1789 NEDAILAVIAQTFIDSCMVSEHKVGRDSPVNKLLYAREIPRYKQMVEKYYADIRQSSPASYQEMN 1853

  Fly  1984 TAMQQLSVRQNEEFDTISALKELYIYITKYKDQIMESLETDINCRKMHLSRKLGNVAATLD 2044
            :|:.:||.......:.:.||:|||.:|.:|.|||:.:||.|...:||.|:.:|..|||.::
  Rat  1854 SALAELSGNYTSAPNCLEALRELYNHIHRYYDQIISALEEDPVAQKMQLACRLQQVAALVE 1914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlexBNP_001245400.1 Sema_plexin_like 86..534 CDD:200497 114/473 (24%)
PSI 535..586 CDD:279745 21/50 (42%)
PSI 683..730 CDD:214655 16/62 (26%)
PSI 836..877 CDD:214655 12/43 (28%)
IPT_plexin_repeat1 888..976 CDD:238585 37/92 (40%)
IPT_plexin_repeat2 977..1095 CDD:238584 30/118 (25%)
IPT_plexin_repeat3 1097..1211 CDD:238586 24/125 (19%)
Plexin_cytopl 1452..2017 CDD:285529 260/598 (43%)
Plxnb3XP_008771853.1 Sema_plexin_B3 37..462 CDD:200538 114/473 (24%)
PSI 464..514 CDD:279745 21/49 (43%)
PSI 622..658 CDD:214655 13/36 (36%)
IPT_plexin_repeat1 824..915 CDD:238585 37/92 (40%)
IPT_plexin_repeat2 916..1001 CDD:238584 29/117 (25%)
IPT 1004..1135 CDD:301692 35/189 (19%)
TIG <1165..1232 CDD:280079 27/72 (38%)
Plexin_cytopl 1317..1887 CDD:285529 260/598 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I9871
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D56043at33208
OrthoFinder 1 1.000 - - FOG0000391
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100269
Panther 1 1.100 - - O PTHR22625
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.920

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