DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PlexB and plxnc1

DIOPT Version :9

Sequence 1:NP_001245400.1 Gene:PlexB / 43766 FlyBaseID:FBgn0025740 Length:2051 Species:Drosophila melanogaster
Sequence 2:XP_031754770.1 Gene:plxnc1 / 100492725 XenbaseID:XB-GENE-856588 Length:1523 Species:Xenopus tropicalis


Alignment Length:2004 Identity:481/2004 - (24%)
Similarity:760/2004 - (37%) Gaps:635/2004 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 ATNKILKLNENLRVLAEAVTGPLHDSPQCHAGGCPEDIETSLVNNFNKILVVSYAHDGILIACGS 167
            ||...|.|.::......|.|.....|.:|. |..|..........:|.:|:|   :..|:::|..
 Frog    47 ATESCLYLFDHTLSQRLAETSANESSTECR-GSAPGQATMGQKPPYNMLLLV---YRDIVLSCWI 107

  Fly   168 IRQGACEIYSLPRF----PATPQFFAVPLAANDENASTYAFVGPARYAWKEEDILYVGTTFTNVG 228
            .....|....|.:|    ..||....       .|.|..|    |...:..|....:..||||..
 Frog   108 TNTSFCNERKLNKFENISSITPDLLT-------PNTSLSA----AGIVFSNEQTYLILATFTNKH 161

  Fly   229 DYRHDVPAISSRRL------DDLNYAEFSIQQSIINIDVKYRDHFLVDYIYGFNSSEYAYFIIVQ 287
            ...|.| :|.:|..      ::.:|||.:....:     ::.:.|..:.|:.|     .||:   
 Frog   162 SDLHPV-SIKTRETMGFITENENSYAELNTTTVL-----QFVNAFSWERIFFF-----PYFV--- 212

  Fly   288 KKSHLADEAGYVTRLARICITDPNYDSYTEITVQCTATENNVDYNI-----------VRDAKVTP 341
                                  |..|:...::|:   .....|..:           :|...:..
 Frog   213 ----------------------PELDNAKILSVK---NPKGADLQLWGLAHLPCGSDIRRGVILS 252

  Fly   342 ASHKLAQKMGIKKDDHVLVTVFSPSREISNQPESKSAMCIYSIKDIEDMFIENIHLCFNG--TTK 404
            :.|.:      |...|....:|: |:..:..|: |:|:|||::.::.....|.|...|..  ::|
 Frog   253 SFHFM------KSGGHFWAGIFT-SQSQAMSPD-KTALCIYNLTNMMKQEKECIAEDFRDECSSK 309

  Fly   405 DRNLGYISGTINDGRCPIVGSLGNIYNFCSVGLKISGVSPITAHALFHFDNVSVTSVTATSTTDQ 469
            |.:.        ....||              |.|: :.|...|.       ::::|.|...  |
 Frog   310 DHSA--------KNSLPI--------------LPIN-LGPTLTHG-------NLSAVFAVEV--Q 342

  Fly   470 QHSLAFLGTNMGVIKKVLLSGQSPGEYEEIVVDAGNRILPNTMMSP--KKD-----FLYVLSQRK 527
            ...:.||||..|.:.||.|..:......||:....|    :|.:|.  |.|     ::||.::.|
 Frog   343 NKMVFFLGTGNGQVLKVTLDSEWKANCPEILFQFDN----DTAVSRTIKADPVNSTYIYVAAENK 403

  Fly   528 ITKLRIEHCSVYTNCSACLESRDPFCGWCSLEKRCTVRSTCQRDTSASRWLSLG-SGQQCIEFES 591
            |.::::.:|..:.....||.::||:||||..:.|||:.:.|........|..:. .|...::|  
 Frog   404 IKRIKVANCESFKTYKECLSAKDPYCGWCHSQTRCTLNAECIPSDVPGNWNGMSEEGGNYLDF-- 466

  Fly   592 IIPEKIPISELSHLHLIIRTLPEPFNAK---YRC----VFGNSTPIDAEILENGLGCATPPLDER 649
            ::   :||.:..     :|...:..|||   ::|    |..|.|..:....:|.:.|:.      
 Frog   467 LV---VPIKDKQ-----LRITAKSSNAKNTTWQCTVQNVGTNKTLCNGVAEKNSMKCSC------ 517

  Fly   650 PLIPT----NTDHILVPLSVRSSETNKDFVSRNFAFFDCSHHGN-CQECLQSSWGCNWCIFDNKC 709
             |:.|    :.|.:.:.|:     ..|..||..|.|..|....| |.||:||  ||.||..:..|
 Frog   518 -LVSTTGLSDNDQLGIELT-----NGKRSVSDVFQFKKCRQLQNRCMECIQS--GCLWCTTNATC 574

  Fly   710 VHKSLQCRNIENAVSTVGHCPHLKKNRPEILLPVRVPIEIR--LEIENLPKPKSAHAGFLCTIHI 772
            ......|::.....:.....|  |.....:.||....::.:  :.|:::...:.::.|....|..
 Frog   575 TSPLTPCKDYGEKANCTALPP--KPTYQVMALPENSMLDNKDNISIKSISSDRISYLGKDILITG 637

  Fly   773 EAAQML----------LPA-HVESNKIVVCEKTPYFYEINTHEYQAKVVVTWNFQHYVDTAIVTL 826
            |..|.|          .|| :||.::||          .:||                  |:::|
 Frog   638 ENLQNLYSVLLFGTSSCPAQNVEISQIV----------NDTH------------------AVLSL 674

  Fly   827 YKCDVLGSHREHPDCSLCVTRDPKYKCAWCSNSCVYNETCIADKNSISSGSKSAIENECPLPRID 891
            .|     |.:|..  |:|.  :||      .|.|..|:|.                |...||...
 Frog   675 PK-----SRKEVK--SICF--NPK------ENGCSENKTI----------------NYVSLPSCF 708

  Fly   892 IIKPLSGPVEGGTLITIEGSNLGIREEDVRGKIFIGSVPCELENYQISVKIECRTGASLYEMSAP 956
            .|.|.:....||..|||.|.|:.|          :.|:......:|....|.|....|..:..||
 Frog   709 NISPNTAWHGGGRNITITGKNMDI----------VNSLIVSNTLHQWRPIILCPGNISQCKFLAP 763

  Fly   957 IKVANDAGFTESSVQFHFKNVLLTGLYPTIGPRSGGTQLSLIGKFLNIGSTMRAFLDEYECHIDV 1021
                          ||         ..||              ::|||..::          :|.
 Frog   764 --------------QF---------AAPT--------------QWLNINMSV----------VDN 781

  Fly  1022 TQASSSQVS-----CTTSEATQPEPIRSLHLVIDGANRTLECQISTPSITNTNPTRSNFGSYQLR 1081
            |..:...:.     |.||.|           |::..:..||.:|        ..|..|.|     
 Frog   782 TFIACGSLKYLENPCFTSFA-----------VLNDIDTELELRI--------KKTNDNLG----- 822

  Fly  1082 SLPRQPCSIFNYTQDPRIMQIKPLRSFKSGGRVLTVHGIYLNSIQKPELEVFYDNERVNKTSCVV 1146
             :.||.            |||               |..|||.|        ||        |:|
 Frog   823 -IQRQE------------MQI---------------HIYYLNKI--------YD--------CIV 843

  Fly  1147 INSNQMECPSPPVNYKFETFKKTNRKMDTELHLQNSSFQTETRYKNEYDRKKRRADFGDTFRLYT 1211
            .|..|                                                            
 Frog   844 YNITQ------------------------------------------------------------ 848

  Fly  1212 NAGSSANYFVNNNMDVTTFVKVHETQLNLQLSFVMDNVQLVRNLNKYFHDIRSTIVYLADPKYLP 1276
                       |..:.|.|.|..:                         |.|..|          
 Frog   849 -----------NLKESTVFCKAKK-------------------------DSRDKI---------- 867

  Fly  1277 FPNDGVKLYKGDSLVIEGELLNLAADEYDVNVTIGTSQCNITSLALNQLLCIPPEQQPLPTDENG 1341
                .|.:.|                   ||||:|    |.|::.                    
 Frog   868 ----DVSIMK-------------------VNVTLG----NFTTIL-------------------- 885

  Fly  1342 VDQSTDLPLVVVKVGRNLRFVIGYLKYDLNKPYVFSHALLVGILTVALLVVVFVIVLIIFRRKST 1406
              ::...|.:.:                          ||| :|.:.||:|: :...::.:|||.
 Frog   886 --ETPGFPRLYI--------------------------LLV-LLLIPLLLVI-IAACLVTKRKSK 920

  Fly  1407 QAEREYKRIQIQMITLESNVRSECKQAFAELQTDMTDLTADLESTG-IPTLDHVNYIMKVFFPGV 1470
            :..   .::..|:..||.:|..|.:..|||||.|..|:|  :||.| ||.||:.::.::.|.|.:
 Frog   921 EMS---NKLSEQLEQLECDVIEEIRSGFAELQMDKLDMT--VESLGTIPFLDYKHFALRTFLPEM 980

  Fly  1471 SD---------HPILNSPKFREGSPQTNYDAAMVQFEQLIGNKYFLLMFIETLEAQRSSFSIRDR 1526
            .:         :..:.|| ||..:...|....:::  :|...|.||:..|.|||.| |:||:|||
 Frog   981 EESKNDFTEKMYENVPSP-FRNRTVDENEHLHLLR--KLFEKKRFLVHLIHTLEHQ-SNFSVRDR 1041

  Fly  1527 VNVASLIMVVLMNKMEYATEILKSLLLRLIDKSLASKHPQLMLRRTESVVEKMLTNYLAICMYDY 1591
            ...||.:.:...:.:.|.||:|:.|:..|:|:| ::|.|:||||||||||||:|||:::.|:|.|
 Frog  1042 CRFASFLTISFQSNLVYLTELLEVLIKDLMDQS-SNKQPKLMLRRTESVVEKLLTNWMSTCLYGY 1105

  Fly  1592 LKEYAGSNLFLLFKAIKHQIEKGLVDAITNDARYSLSEERLLHE-QVTHSVVILHIL-----QDD 1650
            |:|:.|..|:||...:..:|.||.:||||..|.|:|:|:.||.: ....|.:.|::.     :::
 Frog  1106 LREFVGEPLYLLVCMLNQRIHKGPIDAITCKALYTLNEDSLLWQINAKFSSLDLNVYFPNGSEEN 1170

  Fly  1651 LDEKVQCRVNDWDTISQVKLKILDAIFKNTPFSMRPSVNEVDLEWRHGRGGHLTLQDEDLTTKTV 1715
            :.|.::..|.|.||:.|.|.||:...|....::....:::..|...||:   |..|..|:...:|
 Frog  1171 VTESIKVTVLDCDTVGQAKEKIVQKFFIKKGYNWGFPLHDTGLVLHHGQ---LQKQLSDIDNTSV 1232

  Fly  1716 ---NGWKRLNTLAHYGVKESAVMSLIARQNDNYHIPYSKNQNSAPYHNFYFINNSQSHIIINNDI 1777
               ||..:||||.||.:::...:.:|.::|    ......:||:.|                   
 Frog  1233 VLENGIIKLNTLKHYKIEDGVTVKVIIQKN----CDVQDLENSSKY------------------- 1274

  Fly  1778 ESGLQQPRVYHLVKPNIPDHYMNIKNSVLSGGSPAFQSHVVNNCNDRVNK-TIPEVYLTRLLATK 1841
                     ||||.|:             |.||...:...    |...:| .:.|:|||:||:||
 Frog  1275 ---------YHLVLPS-------------SQGSEQIEGEE----NQGKHKFQVKELYLTKLLSTK 1313

  Fly  1842 GTIQKFVDDFFSIILTVNEELPP-AVKWLFDLLDEAARRHDIADTDIVHAWKSNCLPLRFWVNFI 1905
            ..|...|:..|..|.|:....|| |||:.|||||..|....|.|.|::|.||:|.||||||||.:
 Frog  1314 VAIHSSVEKLFRSIWTIPTNKPPTAVKYFFDLLDSQAEIKKITDLDVLHIWKTNSLPLRFWVNIL 1378

  Fly  1906 KNPDFIFDVNKTYSVDSCLSVIAQTFMDACSTSEHRLGKDSPSNKLLFAKDIPNYRIMVKEFYRD 1970
            |||.|:||:.||:.::||||||||.|||:.|.||..|||.||:||||:|||||.::..||.:|:.
 Frog  1379 KNPQFVFDLKKTHLLESCLSVIAQAFMDSFSISEQHLGKSSPTNKLLYAKDIPMFKEEVKNYYKG 1443

  Fly  1971 VSRLPQISDQEMSTAMQQLSVRQNEEFDTISALKELYIYITKYKDQIMESLETD 2024
            :...|.:|..|::..:...|.:...||....||.|||.||.:|...:::.||.:
 Frog  1444 IRDAPPVSSAELNEFLMAESKKHENEFKEDVALLELYKYIKRYHQVVLDMLEKE 1497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlexBNP_001245400.1 Sema_plexin_like 86..534 CDD:200497 90/460 (20%)
PSI 535..586 CDD:279745 15/51 (29%)
PSI 683..730 CDD:214655 13/47 (28%)
PSI 836..877 CDD:214655 9/40 (23%)
IPT_plexin_repeat1 888..976 CDD:238585 20/87 (23%)
IPT_plexin_repeat2 977..1095 CDD:238584 20/122 (16%)
IPT_plexin_repeat3 1097..1211 CDD:238586 14/113 (12%)
Plexin_cytopl 1452..2017 CDD:285529 210/585 (36%)
plxnc1XP_031754770.1 Sema 32..410 CDD:417757 90/460 (20%)
PSI 411..458 CDD:396154 14/46 (30%)
IPT 704..>739 CDD:214657 13/44 (30%)
Plexin_cytopl 962..1488 CDD:400574 209/582 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D90434at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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