DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PlexB and plxnb2a.2

DIOPT Version :10

Sequence 1:NP_524616.2 Gene:PlexB / 43766 FlyBaseID:FBgn0025740 Length:2051 Species:Drosophila melanogaster
Sequence 2:NP_001107960.1 Gene:plxnb2a.2 / 100034640 ZFINID:ZDB-GENE-041210-159 Length:477 Species:Danio rerio


Alignment Length:562 Identity:137/562 - (24%)
Similarity:215/562 - (38%) Gaps:153/562 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 VNNFNKILVVSYAHDGILIACGSIRQGACEIYSLPRFPATPQFFAVPLAANDENASTYAFVGPAR 209
            ::||||:|.|    :.:||.||.:.:|.|.:.:|                |..|...|.......
Zfish     1 MDNFNKLLQV----NSVLIVCGILFRGICSLVNL----------------NSVNKPVYYSDTERE 45

  Fly   210 YAW---KEEDILYVG--------TTFTNVGDY--------RHDVPAISSRRLDDLNYAEFSIQQS 255
            ..|   .||.:..||        ||..|:..:        ......||:..|.:  :.|..:.::
Zfish    46 KTWVASTEESVTVVGVISYFKDTTTNANLSVFLVGKGFGSSDSSKLISTWLLQE--HGEMDVFEN 108

  Fly   256 IINIDVKYRDHFL----VDYIYGFNSSEYAYFIIVQKKSHLAD--EAGYVTRLARICITDPNYDS 314
            ::.........|:    .|:.|.|.::.|.|.:.    ||.|.  .:..:|.:||:...|.:|.|
Zfish   109 MVEASTVQASAFVHRYHHDFRYTFKNNGYIYLLF----SHTASTRHSRKITFIARLSKNDHHYYS 169

  Fly   315 YTEITVQCTA-TENNVD-YNIVRDAKVTPASHKLAQK-MGIKKDDHVLVTVFSPSREISNQPESK 376
            |||:.:.||. ||...: :|.|:.|.:......|||. :....:|.||..|||...|     :.:
Zfish   170 YTELQLNCTINTEQQENTFNKVQAAYLAKPGKVLAQNIVPSNLNDKVLFGVFSADEE-----DGR 229

  Fly   377 SAMCIYSIKDIEDMFIENIHLCFNG------------------------TTKDRNL--GYISGTI 415
            ||:|:|.:..|...|.|.|..|:.|                        |.:|:|:  .||.|. 
Zfish   230 SALCMYPLSSINARFEEVIESCYTGEVLEDDKPKTVYSPYNSKNEAICRTKRDKNMVKAYICGA- 293

  Fly   416 NDGRCPIVGSLGNIYNFCSVGLKISGVSPIT-------AHALFHFDNVSVTSVTATSTTDQQHSL 473
                           .|..        ||:.       |..|.:..|..:|:|..  ..:.:|::
Zfish   294 ---------------EFLP--------SPLASKPEYALAVKLIYTGNDMLTAVAV--AVENEHTV 333

  Fly   474 AFLGTNMGVIKKVLLSGQSPGEYEEIVVD-AGNRILPNTMMSPKKDFLYVLSQRKITKLRIEHCS 537
            |||||:...:.||.|.......|..|... .|..:..|.:.....|.||:.:.|||:|:.::.|.
Zfish   334 AFLGTSGADVLKVHLDPNHTDFYNRIPGQRTGGAVNKNLLFDTGLDHLYITTGRKISKVPVQVCG 398

  Fly   538 VYTNCSACLESRDPFCGWCSLEKRCTVRSTCQRDTSASRWLSLGSGQQCIEFESIIPEKIPISEL 602
            ...:|.:||..:||:||||..|.|||.:..|.:....:.|| .|..|.|                
Zfish   399 PKNDCRSCLIQQDPYCGWCVREGRCTRKKNCNKGEGENVWL-WGPDQAC---------------- 446

  Fly   603 SHLHLIIRTLPEPFNAKYRCVFGNSTPIDAEILENGLGCATP 644
                    .:.||.|.: .|:..:.||      .||:  :||
Zfish   447 --------KILEPINFQ-ACIAVDQTP------PNGM--STP 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlexBNP_524616.2 Sema_plexin_like 86..534 CDD:200497 107/450 (24%)
PSI 535..586 CDD:396154 19/50 (38%)
TIG_plexin 594..682 CDD:465588 10/51 (20%)
PSI 683..730 CDD:214655
TIG_2 738..827 CDD:465619
PSI 836..877 CDD:214655
IPT_plexin_repeat1 888..976 CDD:238585
IPT_plexin_repeat2 977..1095 CDD:238584
IPT_plexin_repeat3 1097..1211 CDD:238586
TIG 1277..>1334 CDD:460355
Plexin_cytopl 1452..2012 CDD:462434
plxnb2a.2NP_001107960.1 Sema 1..395 CDD:472829 107/450 (24%)
PSI 397..440 CDD:396154 17/43 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.