Protein Alignment mod and Pabpc6

DIOPT Version :10

• Sequence 1: NP_524614.2
• Gene: mod / 43764
• FlyBaseID: FBgn0002780
• Length: 542
• Species: Drosophila melanogaster
• Sequence 2: NP_001157308.1
• Gene: Pabpc6 / 67543
• MGIID: 1914793
• Length: 643
• Species: Mus musculus
• Alignment Length: 300
• Identity: 71/300 - (23%)
• Similarity: 119/300 - (39%)
• Gaps: 67/300 - (22%)

  Fly   153 SEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKSV- 216
            |:.:..:.|..||.|          ||.||......|.|...|:.||.:.:.:...:.||:|..
Mouse    87 SQRDPSLRKSGVGNI----------FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYG 141

  Fly   217 LIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQ------------PRNKEENNERTVVVGLIGPNI 269
            .:.|:|...||..:: |...:.|.|:.:.|.:            .|.||..|   |.:..:|.::
Mouse   142 FVHFETQEEAERAIE-KMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTN---VYIKNLGEDM 202

  Fly   270 TKDDLKTFFEKVAP---VEAVTISSNRLMPRAFVRLASVDDIPKAL-KLHSTELFSRFITVRRIS 330
            ..:.|:..|.:..|   |:.:|..|.:.....||.....:|..||: :::..:|..:.|.|.| :
Mouse   203 DDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGR-A 266

  Fly   331 QESISRTSEL----------------------------TLVVENVGKHESYSSDALEKIFKKFGD 367
            |:.:.|.:||                            .|.|:|:  .:....:.|.|.|..||.
Mouse   267 QKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL--DDGIDDERLRKEFSPFGT 329

  Fly   368 VEEIDVVC----SKAVLAFVTFKQSDAATKALAQLDGKTV 403
            :....|..    ||. ..||.|...:.||||:.:::||.|
Mouse   330 ITSAKVTMEGGRSKG-FGFVCFSSPEEATKAVTEMNGKIV 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
mod	NP_524614.2	RRM_SF	177..244	CDD:473069	19/67 (28%)
		PABP-1234	262..>470	CDD:130689	40/177 (23%)
		RRM_SF	339..414	CDD:473069	22/96 (23%)
Pabpc6	NP_001157308.1	PABP-1234	11..622	CDD:130689	70/299 (23%)