DRSC/TRiP Functional Genomics Resources

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Protein Alignment mod and shep

DIOPT Version :10

Sequence 1:NP_524614.2 Gene:mod / 43764 FlyBaseID:FBgn0002780 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster


Alignment Length:184 Identity:36/184 - (19%)
Similarity:72/184 - (39%) Gaps:33/184 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 ANSEKSEENRGIPKVKVGKIPLGTPKNQ-----------IVFVTNLPNEYLHKDLVALFAKFGRL 201
            :|:..:..|.|         |.||.:||           .:::..|......||||.:.|::|.:
  Fly   214 SNTTNTNTNMG---------PNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTI 269

  Fly   202 SALQRFTNLNGNKSV---LIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPRNKEENNERTVVVG 263
            .:.:...:...||..   .:.|:....||..:    |.|. |..|  .:|...::|.:...:.:.
  Fly   270 ISTKAILDKTTNKCKGYGFVDFEQPAFAECAV----KGLQ-GKGV--QAQMAKQQEQDPTNLYIA 327

  Fly   264 LIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPR---AFVRLASVDDIPKALKL 314
            .:.|:..:.||:....|...|.:..|..::.|..   .|.|:.|.:...:.:::
  Fly   328 NLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQM 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
modNP_524614.2 RRM_SF 177..244 CDD:473069 15/69 (22%)
PABP-1234 262..>470 CDD:130689 10/56 (18%)
RRM_SF 339..414 CDD:473069
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 18/87 (21%)
RRM2_MSSP 322..400 CDD:409690 10/60 (17%)
Blue background indicates that the domain is not in the aligned region.

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