Sequence 1: | NP_001247401.1 | Gene: | mod / 43764 | FlyBaseID: | FBgn0002780 | Length: | 542 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476667.1 | Gene: | pAbp / 37070 | FlyBaseID: | FBgn0265297 | Length: | 634 | Species: | Drosophila melanogaster |
Alignment Length: | 294 | Identity: | 65/294 - (22%) |
---|---|---|---|
Similarity: | 113/294 - (38%) | Gaps: | 54/294 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 177 VFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKS--VLIAFDTSTGAEAVLQAKPKALTL 239
Fly 240 GDNVLSVS-----QPRNKEENNERTVVVGLIGPNITKD----DLKTFFE---KVAPVEAVTISSN 292
Fly 293 RLMPRAFVRLASVDDIPKALK-LHSTEL-FSRFITVRRISQESISRTSELTLVVENV--GKHES- 352
Fly 353 -------------YSSDALEKIFKKFGDVEEIDVVC-----SKAVLAFVTFKQSDAATKALAQLD 399
Fly 400 GKTV-----------NKFEWKLH---RFERSTSG 419 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
mod | NP_001247401.1 | RRM_SF | 177..244 | CDD:302621 | 16/68 (24%) |
RRM_SF | 260..327 | CDD:240668 | 13/75 (17%) | ||
RRM_SF | 342..411 | CDD:240668 | 23/100 (23%) | ||
RRM_SF | 422..>465 | CDD:302621 | |||
pAbp | NP_476667.1 | PABP-1234 | 2..625 | CDD:130689 | 65/294 (22%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45439609 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.930 |