Protein Alignment mod and CG12288

DIOPT Version :10

• Sequence 1: NP_524614.2
• Gene: mod / 43764
• FlyBaseID: FBgn0002780
• Length: 542
• Species: Drosophila melanogaster
• Sequence 2: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Alignment Length: 570
• Identity: 120/570 - (21%)
• Similarity: 190/570 - (33%)
• Gaps: 234/570 - (41%)

  Fly     8 TVKGKKATNGEEKPLAK--------RVTKSTKVQ-----------EEETVVPQSPSKKSRKQPVK 53
            |.|.|::...|.||:.|        :|||.:|.:           |.:..|.:||.|.|.|...|
  Fly     3 TPKAKESEKAELKPIKKEPGVVEDGKVTKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAKDLAK 67

  Fly    54 -EVPQFSEEDESDVEEQNDEQPGDDSDFETE-EAAGLIDDEAEEDEEYNSDDEEDDDDDELEPGE 116
             |..:..::.:...::||...|   .:.:|| ||...::.:|.:.|:.           |.||
  Fly    68 IEKKKAKKQAQKLKKQQNKLAP---KEIKTEPEAQVKVESKATKKEKV-----------EKEP-- 116

  Fly   117 VSKSEGADEVDESDDDEEAPVEKP---VSKKSEKANSEKSEENRGIPKVKVGKIPLGTPKNQ--I 176
                            ..||.|||   ||||: |||:...:| .|:.:::       .|..:  .
  Fly   117 ----------------TTAPNEKPKGKVSKKA-KANANNKDE-EGVKRIR-------NPAEEAST 156

  Fly   177 VFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKSVLIAFDTSTGAEAVLQAKPKALTLGD 241
            |||.|||.......||.||..:|.:.:::..|  .|.|.:.
  Fly   157 VFVGNLPINTKRVQLVKLFQPYGLVQSIRLRT--AGGKQLF------------------------ 195

  Fly   242 NVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPRAFVRLASVD 306
                        ::.:|.|...|                                .|:|.|...:
  Fly   196 ------------KHKQRKVAGSL--------------------------------NAYVVLEKPE 216

  Fly   307 DIPKALKLHSTELFSRFITVRRISQESISRTSELTLVVENVGKHESYSSDALEKIFKKFGDVEEI 371
            ...:||.|:.:|.....:   |::..|::                           :|||..::
  Fly   217 IAQQALALNGSEFKENHL---RVTPASMA---------------------------EKFGQAKD- 250

  Fly   372 DVVCSKAVLAFVTFKQ-SDAATKALAQLDGKTVNKFEWKLHRFERSTSGRAILVTNLTSDATEAD 435
                          || ||...|                          |.|.|.:|...|||..
  Fly   251 --------------KQPSDKDAK--------------------------RTIFVGSLKYSATEEQ 275

  Fly   436 LRKVFNDSGEIESIIML--GQK-----AVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHR 493
            ||::|:..|||:.|..|  |.|     |.|.|:..:....:...|::::::.||.:|       |
  Fly   276 LREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVE-------R 333

  Fly   494 LLKKRLAIGQTR------APRKFQKDTKPN-----FGKKPFNKRPAQENG 532
            ...|:|...|.|      |..|....||..     ..||..:|:..:|||
  Fly   334 YQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENG 383

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
mod	NP_524614.2	RRM_SF	177..244	CDD:473069	14/66 (21%)
		PABP-1234	262..>470	CDD:130689	38/215 (18%)
		RRM_SF	339..414	CDD:473069	8/75 (11%)
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	25/153 (16%)
		RRM_SF	261..332	CDD:473069	22/70 (31%)